Click here to switch to the map view.

The map label for this gene is fdhD [H]

Identifier: 87198761

GI number: 87198761

Start: 780218

End: 781012

Strand: Direct

Name: fdhD [H]

Synonym: Saro_0737

Alternate gene names: 87198761

Gene position: 780218-781012 (Clockwise)

Preceding gene: 87198760

Following gene: 87198763

Centisome position: 21.91

GC content: 65.53

Gene sequence:

>795_bases
ATGGTTCCGATGCCGGTTGACGGCGCACGCCCCTTCGTCCTGCGCGAACATTTCGCCGATGGTGCGGAACCCCGGGCGAT
AGAGCGCGCCCTGATCGAGGAGGCGCCCGTAGCCGTCGAGATAAACGGGATAGGCTATGCGGTGATGATGGCGACGCCAG
TCGACCTCGAGGATTACGCGCTCGGCTTCTGCCTTTCGGAACAGTTGATCGCCTCGCCCGAGGAGTTTCTCTCGGCAGAC
GCAAGCAGTGTGGATGCGGGGGGCTGGATGCTGAGGATCCAGCTTTCCGCGTCCGGCGCCGGGCCCTTGCTGGAACGTGC
ACGCCTGCGCCTGTCGGAAGGGAGCTGCGGACTGTGTGGCATCGAGAGCCTGGAGCAGGTCATGCGTCCGCTACCGAGGA
TCGCGGCGGAGCTTGATGTCGCGCCTGAGGCGATGTTCCGGGCCGTGGAAGCGCTTGGCGGGCACCAGATACTCGGTCGC
GAGACGAGAGCGGCCCACGCGGCCGCGCTGTGCGCCACCGATGGCCAAATCGTGCTCGTTCGCGAGGACGTGGGCCGGCA
CAATGCCTTCGACAAGTTGCTGGGAGCAGCGGCCCGACGTGGGCTGGCGATTGAAGATCACTTCATCCTGCTGACCGCAC
GATGCAGTTTCGAGCTGGTCCAGAAGGCTGTGGTGGCGGGGTGTCCGCTGCTGGTGACCATCTCTGCGGCTTCGACGCTG
GCGGTCGAGCAGGCGCGGTCGCATGGTCTCAGGCTTGCAAGCCTTGCCCGGAGCGACAGTTTGCTCGAAGCCTGA

Upstream 100 bases:

>100_bases
GGCAGCGCGGGCCTCGATTCGGTGGCTGCAGAAGCGATGGCGCGGGTGGCCGACGGTCGTATTCCCGCGCCGCAGACCAG
GGCGACCGATCCGGAAGTCC

Downstream 100 bases:

>100_bases
GGCGGTCCATGTTTTCAAGCGCCTGGACGAGGGCAGAAGTATTGACGGGCTTTGCCAGCATGGGGGCTCGTGGCGCGTCG
ACCTGGTCGTCCAGCGATGA

Product: formate dehydrogenase family accessory protein FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MVPMPVDGARPFVLREHFADGAEPRAIERALIEEAPVAVEINGIGYAVMMATPVDLEDYALGFCLSEQLIASPEEFLSAD
ASSVDAGGWMLRIQLSASGAGPLLERARLRLSEGSCGLCGIESLEQVMRPLPRIAAELDVAPEAMFRAVEALGGHQILGR
ETRAAHAAALCATDGQIVLVREDVGRHNAFDKLLGAAARRGLAIEDHFILLTARCSFELVQKAVVAGCPLLVTISAASTL
AVEQARSHGLRLASLARSDSLLEA

Sequences:

>Translated_264_residues
MVPMPVDGARPFVLREHFADGAEPRAIERALIEEAPVAVEINGIGYAVMMATPVDLEDYALGFCLSEQLIASPEEFLSAD
ASSVDAGGWMLRIQLSASGAGPLLERARLRLSEGSCGLCGIESLEQVMRPLPRIAAELDVAPEAMFRAVEALGGHQILGR
ETRAAHAAALCATDGQIVLVREDVGRHNAFDKLLGAAARRGLAIEDHFILLTARCSFELVQKAVVAGCPLLVTISAASTL
AVEQARSHGLRLASLARSDSLLEA
>Mature_264_residues
MVPMPVDGARPFVLREHFADGAEPRAIERALIEEAPVAVEINGIGYAVMMATPVDLEDYALGFCLSEQLIASPEEFLSAD
ASSVDAGGWMLRIQLSASGAGPLLERARLRLSEGSCGLCGIESLEQVMRPLPRIAAELDVAPEAMFRAVEALGGHQILGR
ETRAAHAAALCATDGQIVLVREDVGRHNAFDKLLGAAARRGLAIEDHFILLTARCSFELVQKAVVAGCPLLVTISAASTL
AVEQARSHGLRLASLARSDSLLEA

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=238, Percent_Identity=38.2352941176471, Blast_Score=144, Evalue=6e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 27974; Mature: 27974

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPMPVDGARPFVLREHFADGAEPRAIERALIEEAPVAVEINGIGYAVMMATPVDLEDYA
CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCHHHHH
LGFCLSEQLIASPEEFLSADASSVDAGGWMLRIQLSASGAGPLLERARLRLSEGSCGLCG
HHHHHHHHHHCCHHHHHCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHEECCCCCCCCC
IESLEQVMRPLPRIAAELDVAPEAMFRAVEALGGHQILGRETRAAHAAALCATDGQIVLV
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCEEEEE
REDVGRHNAFDKLLGAAARRGLAIEDHFILLTARCSFELVQKAVVAGCPLLVTISAASTL
ECCCCCCHHHHHHHHHHHHCCCEEECEEEEEEECCCHHHHHHHHHHCCCEEEEECCHHHH
AVEQARSHGLRLASLARSDSLLEA
HHHHHHHCCCCHHHHHHCCHHHCC
>Mature Secondary Structure
MVPMPVDGARPFVLREHFADGAEPRAIERALIEEAPVAVEINGIGYAVMMATPVDLEDYA
CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCHHHHH
LGFCLSEQLIASPEEFLSADASSVDAGGWMLRIQLSASGAGPLLERARLRLSEGSCGLCG
HHHHHHHHHHCCHHHHHCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHEECCCCCCCCC
IESLEQVMRPLPRIAAELDVAPEAMFRAVEALGGHQILGRETRAAHAAALCATDGQIVLV
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCEEEEE
REDVGRHNAFDKLLGAAARRGLAIEDHFILLTARCSFELVQKAVVAGCPLLVTISAASTL
ECCCCCCHHHHHHHHHHHHCCCEEECEEEEEEECCCHHHHHHHHHHCCCEEEEECCHHHH
AVEQARSHGLRLASLARSDSLLEA
HHHHHHHCCCCHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA