Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is vanA [H]
Identifier: 87198731
GI number: 87198731
Start: 747979
End: 749004
Strand: Direct
Name: vanA [H]
Synonym: Saro_0707
Alternate gene names: 87198731
Gene position: 747979-749004 (Clockwise)
Preceding gene: 87198729
Following gene: 87198736
Centisome position: 21.0
GC content: 64.62
Gene sequence:
>1026_bases ATGAGCGTGTTCCTTCGCAATGCCTGGTACATGGCGTGCTGGTCGCACGAGGTGCCGGAGGGGGGATTTCTCGCCCGCCG CCTGCTGGACAAGCCCTGGGTGATCTGGCGCAAGGCAGACGGGACGCCGGTGATCATGGCCGATCGTTGCCCGCACCGGT TCGTCCCGCTTAGCCGTGGGCAGCGCGATGGCGACATGATGCGGTGCGGCTATCACGGGCTGGCCTTCAGCAGCAGCGGC GGCTGCGTGCACAACCCCTTTACCGATGAAGCACTGCCGCTGGCGCGGGTCGAGGTGCTGCCGGTGGTAGAGAAGCACAC TGGCCTGTGGTTCTGGCCGGGGGATGCCGACCGAGCAGATCCGGCGCTGATCCCCGATTTCGGTTTCCTTGACGTCGAAC GCCCGCTCCATCGCGGACACCTCAAAATGGATGCCGGCTACGAGCTGGTGACCGACAATCTGATGGACCTCAGCCACGCC GAATTCATTCACCGCGACAGTTTCGGCGTGAACGGCTCCTTGCTGACTTGCGGCCAGCACGAAGTGGTGCAGGACGAGGG CGGGGCAATCTGGAACAACTGGACGATGCCGGATTCCGAGCCGCCATCCTGGGCCGTGGCAATGCTGCCCGAAGGAGCCC GGACCGACCAATGGCTCCATATGCGCTGGAATGCGCCTTCGTGTCTTGCGTTGTTCCTCGGTCTTGCTCGGTCGGGAACC GATCGCAAGGACATGGTCGTGCCGCCGATGGCAGACCCGCACATCCTGACGCCGGAGACGGTGACATCGACGCACTACTT CTACACCCACGAGCCGACGCCTGAAGCACATGCGCTGCTGGAGAAGGCCTTCCTCGAGGAGGATCACCCGATGCTCCACG CACAGCAGGAGGCTATGGGCAGCGCCGATTTCTGGGACTTGCGCCCGGTGGTCCTGCCTTCCGATGCGGGTGCAATCCGC GTTCGGCGGCGGATGATGCAGCTGCGACGGGCTGAAGCGGGTCTGGAGGAGGAGGCTGCCGCCTGA
Upstream 100 bases:
>100_bases ACGACTTCCGGATTTCGGCTCACAGGGCTTTTCAACTTCGTGGCCATCGCTATAAAGAAACCAACTGGTTTGTTTGATTC GACATACGGGGAGAATGGCG
Downstream 100 bases:
>100_bases TTGGCAGGCAGCATCTCGGCCTCGCTCGATGCAAACGGTTCTAGGCAATCGACCCAGTCAGGCCGACTGCCTAGAACATC GGGTGTGGATTGGCCGACTT
Product: Rieske (2Fe-2S) protein
Products: NA
Alternate protein names: 4-hydroxy-3-methoxybenzoate demethylase [H]
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MSVFLRNAWYMACWSHEVPEGGFLARRLLDKPWVIWRKADGTPVIMADRCPHRFVPLSRGQRDGDMMRCGYHGLAFSSSG GCVHNPFTDEALPLARVEVLPVVEKHTGLWFWPGDADRADPALIPDFGFLDVERPLHRGHLKMDAGYELVTDNLMDLSHA EFIHRDSFGVNGSLLTCGQHEVVQDEGGAIWNNWTMPDSEPPSWAVAMLPEGARTDQWLHMRWNAPSCLALFLGLARSGT DRKDMVVPPMADPHILTPETVTSTHYFYTHEPTPEAHALLEKAFLEEDHPMLHAQQEAMGSADFWDLRPVVLPSDAGAIR VRRRMMQLRRAEAGLEEEAAA
Sequences:
>Translated_341_residues MSVFLRNAWYMACWSHEVPEGGFLARRLLDKPWVIWRKADGTPVIMADRCPHRFVPLSRGQRDGDMMRCGYHGLAFSSSG GCVHNPFTDEALPLARVEVLPVVEKHTGLWFWPGDADRADPALIPDFGFLDVERPLHRGHLKMDAGYELVTDNLMDLSHA EFIHRDSFGVNGSLLTCGQHEVVQDEGGAIWNNWTMPDSEPPSWAVAMLPEGARTDQWLHMRWNAPSCLALFLGLARSGT DRKDMVVPPMADPHILTPETVTSTHYFYTHEPTPEAHALLEKAFLEEDHPMLHAQQEAMGSADFWDLRPVVLPSDAGAIR VRRRMMQLRRAEAGLEEEAAA >Mature_340_residues SVFLRNAWYMACWSHEVPEGGFLARRLLDKPWVIWRKADGTPVIMADRCPHRFVPLSRGQRDGDMMRCGYHGLAFSSSGG CVHNPFTDEALPLARVEVLPVVEKHTGLWFWPGDADRADPALIPDFGFLDVERPLHRGHLKMDAGYELVTDNLMDLSHAE FIHRDSFGVNGSLLTCGQHEVVQDEGGAIWNNWTMPDSEPPSWAVAMLPEGARTDQWLHMRWNAPSCLALFLGLARSGTD RKDMVVPPMADPHILTPETVTSTHYFYTHEPTPEAHALLEKAFLEEDHPMLHAQQEAMGSADFWDLRPVVLPSDAGAIRV RRRMMQLRRAEAGLEEEAAA
Specific function: Unknown
COG id: COG4638
COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Rieske domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017941 - InterPro: IPR015881 [H]
Pfam domain/function: PF00355 Rieske [H]
EC number: =1.14.13.82 [H]
Molecular weight: Translated: 38392; Mature: 38261
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVFLRNAWYMACWSHEVPEGGFLARRLLDKPWVIWRKADGTPVIMADRCPHRFVPLSRG CEEEEECCEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCEECCCC QRDGDMMRCGYHGLAFSSSGGCVHNPFTDEALPLARVEVLPVVEKHTGLWFWPGDADRAD CCCCCEEEECCCCEEEECCCCEEECCCCCCCCCHHHEEEEEEEHHCCCEEEECCCCCCCC PALIPDFGFLDVERPLHRGHLKMDAGYELVTDNLMDLSHAEFIHRDSFGVNGSLLTCGQH CCCCCCCCCEECCCCHHCCCEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEECCCC EVVQDEGGAIWNNWTMPDSEPPSWAVAMLPEGARTDQWLHMRWNAPSCLALFLGLARSGT CEEECCCCEEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHCCCC DRKDMVVPPMADPHILTPETVTSTHYFYTHEPTPEAHALLEKAFLEEDHPMLHAQQEAMG CCCCEEECCCCCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHCC SADFWDLRPVVLPSDAGAIRVRRRMMQLRRAEAGLEEEAAA CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCHHHCCC >Mature Secondary Structure SVFLRNAWYMACWSHEVPEGGFLARRLLDKPWVIWRKADGTPVIMADRCPHRFVPLSRG EEEEECCEEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCEECCCC QRDGDMMRCGYHGLAFSSSGGCVHNPFTDEALPLARVEVLPVVEKHTGLWFWPGDADRAD CCCCCEEEECCCCEEEECCCCEEECCCCCCCCCHHHEEEEEEEHHCCCEEEECCCCCCCC PALIPDFGFLDVERPLHRGHLKMDAGYELVTDNLMDLSHAEFIHRDSFGVNGSLLTCGQH CCCCCCCCCEECCCCHHCCCEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCCCEEECCCC EVVQDEGGAIWNNWTMPDSEPPSWAVAMLPEGARTDQWLHMRWNAPSCLALFLGLARSGT CEEECCCCEEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHCCCC DRKDMVVPPMADPHILTPETVTSTHYFYTHEPTPEAHALLEKAFLEEDHPMLHAQQEAMG CCCCEEECCCCCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHCC SADFWDLRPVVLPSDAGAIRVRRRMMQLRRAEAGLEEEAAA CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9098058 [H]