Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

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The map label for this gene is yetM [H]

Identifier: 87198736

GI number: 87198736

Start: 752468

End: 753583

Strand: Direct

Name: yetM [H]

Synonym: Saro_0712

Alternate gene names: 87198736

Gene position: 752468-753583 (Clockwise)

Preceding gene: 87198731

Following gene: 87198737

Centisome position: 21.13

GC content: 64.96

Gene sequence:

>1116_bases
ATGAACAAGCTCGAAGCCCTGATCATAGGTGCCGGTATCGGAGGACTTTCCGCCGCAATAGCACTTGCCCGAAAGGGATT
TTCCGTGACCGCGATCGAGCGTGACCCTTCGTGGTCGGTCTATGGCGTCGGCATCATCCAGCAGTCGAACGTCGTGCGCG
CGATGGAGCAGCTTGGCGTACTCGACAGCTTCCTTGATGCGGCCTGCGGCTTCGACGCGGTCGAGATCTTTGCTCCTGAC
GGCACCAAGGTTGCCCGCGTTCCGTCGCCGCGGCTGGTGGAGGGCAAGCCCGCCAACGTCGGCATCGGCCGCCGTGCGCT
TCAGAAGGTGCTGGGCGACAGCGCCAAGGCGCTGGGCACCGACTTGAGGCTCGGCCTGACTGCCGAAAGGATCGACGATG
ACGGGGAGAAGGTTGCCGTTACCTTCTCCGACGGTTCAACCGGCAGCTATGACGTGGTGATCGGCGCGGATGGGGTCTAT
TCGCAGACCCGCTCGATGATCCTGCCCGACGCGGAAAAGCCGCAGTTCACCGGACAGGCTGTGTGGCGCTACAACTTCCC
GCGTGCGGAGGGCCTCGACGCGCTGCAGGTCTACAACGGGCCGACCGGAGTCGGGCTCGTGCCGATGAGCGCGGACGTCA
TGTACATGTACGTGACAACCCCCGAGCCCGACAATCCGCGCTACCCCACCGAAGGCATTGCCGCCGCGATGCGCGGCAAG
CTTGCCAATTGCAGCCCGCAGATCCGTGCGCTGGGCGAACAGATCACCGACGACGAGGGCGTGGTCTACCGTCCCCTCGA
AGGCATGATGGTGCATGGGCCCTGGAGCAAGGGTCGCGTCGGGCTGCTCGGCGATGCGGTCCACGCCACAACGCCACACC
TTGGACAGGGCGCCGGCATGGCGATCGAGGATGCACTCGTCCTGGCAGAGGAGCTTGAACGCCACGACGACGTCGAGGCC
GCGCTCAAGGCCTATCGCGACCGCCGTTACGAGCGCTGCCGCTACATCGTGGAATCCAGCCTCGCGATCTGCCTCGGCCA
GCTCGGCAAGGCGCCGCCGGTCGACAATCACAAGGCGACTGCCGAAATGTTCGGCGTCGTCTCGCAACCCATCTGA

Upstream 100 bases:

>100_bases
TGCTTTATTGATTGGTGTTGCAGCCCTAAGCATCGCCGCATCAGAAATCCGCAGAAGGGAGGGGCCCGCAATCCGTCAGC
GCGGTTGCGGGCTGTATGTC

Downstream 100 bases:

>100_bases
TCCCAGCTTCAAGGAAGATCTCAATGAGCCGCGTGACCGAAATCCGCTATGTCGGATATGGCGTGAAGGACTTTGACGCC
GAAAAGGCGTTCTATGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MNKLEALIIGAGIGGLSAAIALARKGFSVTAIERDPSWSVYGVGIIQQSNVVRAMEQLGVLDSFLDAACGFDAVEIFAPD
GTKVARVPSPRLVEGKPANVGIGRRALQKVLGDSAKALGTDLRLGLTAERIDDDGEKVAVTFSDGSTGSYDVVIGADGVY
SQTRSMILPDAEKPQFTGQAVWRYNFPRAEGLDALQVYNGPTGVGLVPMSADVMYMYVTTPEPDNPRYPTEGIAAAMRGK
LANCSPQIRALGEQITDDEGVVYRPLEGMMVHGPWSKGRVGLLGDAVHATTPHLGQGAGMAIEDALVLAEELERHDDVEA
ALKAYRDRRYERCRYIVESSLAICLGQLGKAPPVDNHKATAEMFGVVSQPI

Sequences:

>Translated_371_residues
MNKLEALIIGAGIGGLSAAIALARKGFSVTAIERDPSWSVYGVGIIQQSNVVRAMEQLGVLDSFLDAACGFDAVEIFAPD
GTKVARVPSPRLVEGKPANVGIGRRALQKVLGDSAKALGTDLRLGLTAERIDDDGEKVAVTFSDGSTGSYDVVIGADGVY
SQTRSMILPDAEKPQFTGQAVWRYNFPRAEGLDALQVYNGPTGVGLVPMSADVMYMYVTTPEPDNPRYPTEGIAAAMRGK
LANCSPQIRALGEQITDDEGVVYRPLEGMMVHGPWSKGRVGLLGDAVHATTPHLGQGAGMAIEDALVLAEELERHDDVEA
ALKAYRDRRYERCRYIVESSLAICLGQLGKAPPVDNHKATAEMFGVVSQPI
>Mature_371_residues
MNKLEALIIGAGIGGLSAAIALARKGFSVTAIERDPSWSVYGVGIIQQSNVVRAMEQLGVLDSFLDAACGFDAVEIFAPD
GTKVARVPSPRLVEGKPANVGIGRRALQKVLGDSAKALGTDLRLGLTAERIDDDGEKVAVTFSDGSTGSYDVVIGADGVY
SQTRSMILPDAEKPQFTGQAVWRYNFPRAEGLDALQVYNGPTGVGLVPMSADVMYMYVTTPEPDNPRYPTEGIAAAMRGK
LANCSPQIRALGEQITDDEGVVYRPLEGMMVHGPWSKGRVGLLGDAVHATTPHLGQGAGMAIEDALVLAEELERHDDVEA
ALKAYRDRRYERCRYIVESSLAICLGQLGKAPPVDNHKATAEMFGVVSQPI

Specific function: Unknown

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: NA

Molecular weight: Translated: 39544; Mature: 39544

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLEALIIGAGIGGLSAAIALARKGFSVTAIERDPSWSVYGVGIIQQSNVVRAMEQLGV
CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHH
LDSFLDAACGFDAVEIFAPDGTKVARVPSPRLVEGKPANVGIGRRALQKVLGDSAKALGT
HHHHHHHHCCCCEEEEECCCCCEEEECCCCCEECCCCCCCCCCHHHHHHHHCCCHHHHCC
DLRLGLTAERIDDDGEKVAVTFSDGSTGSYDVVIGADGVYSQTRSMILPDAEKPQFTGQA
CEEECEEHHHCCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHCEECCCCCCCCCCCCE
VWRYNFPRAEGLDALQVYNGPTGVGLVPMSADVMYMYVTTPEPDNPRYPTEGIAAAMRGK
EEEECCCCCCCCCEEEEECCCCCCEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHCC
LANCSPQIRALGEQITDDEGVVYRPLEGMMVHGPWSKGRVGLLGDAVHATTPHLGQGAGM
CCCCCHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCEEEEECHHHCCCCCCCCCCCC
AIEDALVLAEELERHDDVEAALKAYRDRRYERCRYIVESSLAICLGQLGKAPPVDNHKAT
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
AEMFGVVSQPI
HHHHHHHCCCC
>Mature Secondary Structure
MNKLEALIIGAGIGGLSAAIALARKGFSVTAIERDPSWSVYGVGIIQQSNVVRAMEQLGV
CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHH
LDSFLDAACGFDAVEIFAPDGTKVARVPSPRLVEGKPANVGIGRRALQKVLGDSAKALGT
HHHHHHHHCCCCEEEEECCCCCEEEECCCCCEECCCCCCCCCCHHHHHHHHCCCHHHHCC
DLRLGLTAERIDDDGEKVAVTFSDGSTGSYDVVIGADGVYSQTRSMILPDAEKPQFTGQA
CEEECEEHHHCCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHCEECCCCCCCCCCCCE
VWRYNFPRAEGLDALQVYNGPTGVGLVPMSADVMYMYVTTPEPDNPRYPTEGIAAAMRGK
EEEECCCCCCCCCEEEEECCCCCCEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHCC
LANCSPQIRALGEQITDDEGVVYRPLEGMMVHGPWSKGRVGLLGDAVHATTPHLGQGAGM
CCCCCHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCEEEEECHHHCCCCCCCCCCCC
AIEDALVLAEELERHDDVEAALKAYRDRRYERCRYIVESSLAICLGQLGKAPPVDNHKAT
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
AEMFGVVSQPI
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]