Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198529
Identifier: 87198529
GI number: 87198529
Start: 547191
End: 547607
Strand: Direct
Name: 87198529
Synonym: Saro_0504
Alternate gene names: NA
Gene position: 547191-547607 (Clockwise)
Preceding gene: 87198528
Following gene: 87198530
Centisome position: 15.36
GC content: 58.27
Gene sequence:
>417_bases TTGGGAGCCGTTCGACAATTGCGGCGCATGGATCCCAAGTTAAATCTTAACGGTGCCGCGCGCAGGTGGAATTTCGACCG AATCGATCCTTCGCCGGGAATGTCGATGCACCGAATAGCAATCGCCTCGTTCGCAATCCTTCAGCTTGCCTCGCCGGCAT TTGCACATGGGGGTGGGCTAAACGCACAGGGTTGTCACAACAATCGCAAGACTGGCGACTATCACTGTCACCGAAGCTCA AGCGGGGCTCAAGCGCCGCGCTTGCCACCGGTCCGATCAGACCGTAGTTCGTTCCGGAATTGCAGTGAGGCGAGAGCTGC AGGTGCTGCGCCTGTATATCGTGGCGATCCTGGATACGGGCTCAACCTCGATCGTGATGGCGACGGAGTGGGCTGTGAGC CATTTCGCGGACGTTAG
Upstream 100 bases:
>100_bases GTTGGTGCTTGAGAAGGACGCACAAGTTTTGTGACCTGACGGCCAATTAGGTCGAGCTAATCTGTCCGTTGTTCACCGAG CATGTCCCTGGAGCTGAGCC
Downstream 100 bases:
>100_bases AAATGCCAGGCCTATCTCGATGAAGCACAACACCGGCTGGGAATAACCGCTAGATTGAGGATCGGTATCGGCGGTACCCG GTCGATGGCGGGATAGCTGT
Product: Excalibur
Products: NA
Alternate protein names: Excalibur
Number of amino acids: Translated: 138; Mature: 137
Protein sequence:
>138_residues MGAVRQLRRMDPKLNLNGAARRWNFDRIDPSPGMSMHRIAIASFAILQLASPAFAHGGGLNAQGCHNNRKTGDYHCHRSS SGAQAPRLPPVRSDRSSFRNCSEARAAGAAPVYRGDPGYGLNLDRDGDGVGCEPFRGR
Sequences:
>Translated_138_residues MGAVRQLRRMDPKLNLNGAARRWNFDRIDPSPGMSMHRIAIASFAILQLASPAFAHGGGLNAQGCHNNRKTGDYHCHRSS SGAQAPRLPPVRSDRSSFRNCSEARAAGAAPVYRGDPGYGLNLDRDGDGVGCEPFRGR >Mature_137_residues GAVRQLRRMDPKLNLNGAARRWNFDRIDPSPGMSMHRIAIASFAILQLASPAFAHGGGLNAQGCHNNRKTGDYHCHRSSS GAQAPRLPPVRSDRSSFRNCSEARAAGAAPVYRGDPGYGLNLDRDGDGVGCEPFRGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14916; Mature: 14785
Theoretical pI: Translated: 10.86; Mature: 10.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAVRQLRRMDPKLNLNGAARRWNFDRIDPSPGMSMHRIAIASFAILQLASPAFAHGGGL CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC NAQGCHNNRKTGDYHCHRSSSGAQAPRLPPVRSDRSSFRNCSEARAAGAAPVYRGDPGYG CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCC LNLDRDGDGVGCEPFRGR CCCCCCCCCCCCCCCCCC >Mature Secondary Structure GAVRQLRRMDPKLNLNGAARRWNFDRIDPSPGMSMHRIAIASFAILQLASPAFAHGGGL CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC NAQGCHNNRKTGDYHCHRSSSGAQAPRLPPVRSDRSSFRNCSEARAAGAAPVYRGDPGYG CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCC LNLDRDGDGVGCEPFRGR CCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA