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The map label for this gene is ycjZ [H]

Identifier: 87198501

GI number: 87198501

Start: 519733

End: 520689

Strand: Direct

Name: ycjZ [H]

Synonym: Saro_0476

Alternate gene names: 87198501

Gene position: 519733-520689 (Clockwise)

Preceding gene: 87198495

Following gene: 87198502

Centisome position: 14.59

GC content: 68.03

Gene sequence:

>957_bases
ATGTTTCGCACCGAGCTTGGCGATCTTTCGGTGTTCCTGGTCGTATCGGAAGAGCGCAGTTTTACCCGGGCGGCAGTGCG
GCTGGGTACGTCGCAGTCGGCTGTGAGCCTGGCGGTGCGGCGGCTTGAGGAGCATCTCGGGCTCAAGCTGCTGGCCCGCA
CAACGCGCAGCGTCAGCCCGACCGAGGCGGGAGAGCAGTTGCTGGCGACGCTCAAGCCTTCGCTTGGCGACATCCGTGAC
CGGCTGACCTCGCTGACCCGATTGCGGGCCCGGCCAGCGGGGCTGGTGCGGATCACGACGAGCCGGCATGCCGCCGAGAC
GCTGCTGTGGCCGGCGGTCGATGCCGTGATGGCCCGCTATCCCGACATCGAGGTGGAAATTTCCATCGACGGGGCCTTGA
CCAACATCGTGGCCGACCGCTTCGACGCCGGGGTGCGGCTGGGCGAGAGCCTGGAGAAGGACATGGTTGCCGTGCGCATC
GGGCCGGACCTGCGGATGGCCGTGGTTTGCGCCCCGGCCTATCTCGAAGGGCGCGAGCCGCCGCGCGGCCCGCGCGATCT
GGAGGCCCATCGCTGCATCAACTTGCGCATGGCGACGCGGGGCAATCTCTATGCCTGGGAGTTCGAGAAGGACGGCCGGG
CGCTGAACGTGCGGGTGGAGGGGGCGCTTATCGTGAATGACGCAGGCATTGCGGTGCGTGCCGCGAAGGCTGGACACGGC
CTGGCCTGCGTGCTCGAGGACGAGGGCGTACTGCGCGATATCGAGGCGGGCAATCTGGTACGGGTGCTGGAGGATTGGTG
CCCCCCCCTTCGCGGGGCATCATCTCTACTATCCGGACCGGCGCAACCTTTCGCCCGCGTTCCGCGAGGTGCTGGACGAG
CTGCGTCTGCGCGCAGGCTGACTGCGTCGCGCGCCCTCTTGCGCTTTGGCGCGCCGCAGCCGAACTATGAGGCATGA

Upstream 100 bases:

>100_bases
CGATGGCGGGAGCCAAGGTTCGTGCGGCCTCCGGATAGACCAACCGGACTTCCTATATTAGATGCATATTTCTGCATGAA
TTTATATCAGGATCGCATGA

Downstream 100 bases:

>100_bases
CAGAAGAAGAAAAGCTGCACGAGCTTACCAAGCGCAAGTTCTACAAGGCCGAACAGGAAGCAGGCTTCGTTGAAAGCCAG
CCCCGGACAACTCCACAGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MFRTELGDLSVFLVVSEERSFTRAAVRLGTSQSAVSLAVRRLEEHLGLKLLARTTRSVSPTEAGEQLLATLKPSLGDIRD
RLTSLTRLRARPAGLVRITTSRHAAETLLWPAVDAVMARYPDIEVEISIDGALTNIVADRFDAGVRLGESLEKDMVAVRI
GPDLRMAVVCAPAYLEGREPPRGPRDLEAHRCINLRMATRGNLYAWEFEKDGRALNVRVEGALIVNDAGIAVRAAKAGHG
LACVLEDEGVLRDIEAGNLVRVLEDWCPPLRGASSLLSGPAQPFARVPRGAGRAASARRLTASRALLRFGAPQPNYEA

Sequences:

>Translated_318_residues
MFRTELGDLSVFLVVSEERSFTRAAVRLGTSQSAVSLAVRRLEEHLGLKLLARTTRSVSPTEAGEQLLATLKPSLGDIRD
RLTSLTRLRARPAGLVRITTSRHAAETLLWPAVDAVMARYPDIEVEISIDGALTNIVADRFDAGVRLGESLEKDMVAVRI
GPDLRMAVVCAPAYLEGREPPRGPRDLEAHRCINLRMATRGNLYAWEFEKDGRALNVRVEGALIVNDAGIAVRAAKAGHG
LACVLEDEGVLRDIEAGNLVRVLEDWCPPLRGASSLLSGPAQPFARVPRGAGRAASARRLTASRALLRFGAPQPNYEA
>Mature_318_residues
MFRTELGDLSVFLVVSEERSFTRAAVRLGTSQSAVSLAVRRLEEHLGLKLLARTTRSVSPTEAGEQLLATLKPSLGDIRD
RLTSLTRLRARPAGLVRITTSRHAAETLLWPAVDAVMARYPDIEVEISIDGALTNIVADRFDAGVRLGESLEKDMVAVRI
GPDLRMAVVCAPAYLEGREPPRGPRDLEAHRCINLRMATRGNLYAWEFEKDGRALNVRVEGALIVNDAGIAVRAAKAGHG
LACVLEDEGVLRDIEAGNLVRVLEDWCPPLRGASSLLSGPAQPFARVPRGAGRAASARRLTASRALLRFGAPQPNYEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=272, Percent_Identity=49.6323529411765, Blast_Score=260, Evalue=8e-71,
Organism=Escherichia coli, GI1787128, Length=264, Percent_Identity=37.1212121212121, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI1786401, Length=263, Percent_Identity=28.5171102661597, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789440, Length=314, Percent_Identity=25.4777070063694, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87081978, Length=266, Percent_Identity=28.1954887218045, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789639, Length=242, Percent_Identity=30.5785123966942, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789173, Length=266, Percent_Identity=30.8270676691729, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788748, Length=119, Percent_Identity=41.1764705882353, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI145693193, Length=262, Percent_Identity=29.0076335877863, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1786448, Length=262, Percent_Identity=27.0992366412214, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI145693105, Length=150, Percent_Identity=26, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787879, Length=166, Percent_Identity=33.7349397590361, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=150, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34482; Mature: 34482

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRTELGDLSVFLVVSEERSFTRAAVRLGTSQSAVSLAVRRLEEHLGLKLLARTTRSVSP
CCCCCCCCEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHEEHHHHCCCCC
TEAGEQLLATLKPSLGDIRDRLTSLTRLRARPAGLVRITTSRHAAETLLWPAVDAVMARY
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
PDIEVEISIDGALTNIVADRFDAGVRLGESLEKDMVAVRIGPDLRMAVVCAPAYLEGREP
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECHHHCCCCC
PRGPRDLEAHRCINLRMATRGNLYAWEFEKDGRALNVRVEGALIVNDAGIAVRAAKAGHG
CCCCCCCCHHHEEEEEEECCCCEEEEEECCCCCEEEEEEEEEEEEECCCEEEEEECCCCC
LACVLEDEGVLRDIEAGNLVRVLEDWCPPLRGASSLLSGPAQPFARVPRGAGRAASARRL
EEEEEECCCCEEECCCCCHHHHHHHCCCCCCCHHHHHCCCCCHHHHCCCCCCCCCHHHHH
TASRALLRFGAPQPNYEA
HHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MFRTELGDLSVFLVVSEERSFTRAAVRLGTSQSAVSLAVRRLEEHLGLKLLARTTRSVSP
CCCCCCCCEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHEEHHHHCCCCC
TEAGEQLLATLKPSLGDIRDRLTSLTRLRARPAGLVRITTSRHAAETLLWPAVDAVMARY
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
PDIEVEISIDGALTNIVADRFDAGVRLGESLEKDMVAVRIGPDLRMAVVCAPAYLEGREP
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECHHHCCCCC
PRGPRDLEAHRCINLRMATRGNLYAWEFEKDGRALNVRVEGALIVNDAGIAVRAAKAGHG
CCCCCCCCHHHEEEEEEECCCCEEEEEECCCCCEEEEEEEEEEEEECCCEEEEEECCCCC
LACVLEDEGVLRDIEAGNLVRVLEDWCPPLRGASSLLSGPAQPFARVPRGAGRAASARRL
EEEEEECCCCEEECCCCCHHHHHHHCCCCCCCHHHHHCCCCCHHHHCCCCCCCCCHHHHH
TASRALLRFGAPQPNYEA
HHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]