| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is irgA [H]
Identifier: 87198479
GI number: 87198479
Start: 497246
End: 499669
Strand: Direct
Name: irgA [H]
Synonym: Saro_0454
Alternate gene names: 87198479
Gene position: 497246-499669 (Clockwise)
Preceding gene: 87198478
Following gene: 87198481
Centisome position: 13.96
GC content: 62.25
Gene sequence:
>2424_bases ATGCCGAAGTCAACCTACACTCGTGCTTTGCTGGCAGGCGCCTGCGCGCTCGCCTTCGCGCTGCCCGCGCATGCGCAGGA CGCAGCCCAGGCCACCGAGGCAGAAGACACCAACCCCAACGTCATCATCGTGACCGCGCAGAACCGCGCGCAGAACCTCA ACGACGTTCCGATCAAGATCGACGTCGTCTCCGGCGAGGAGCTGCAGAAGGCTGGCTTTGCCAGCATGAACGACGTCGGC CAGATCGCGCCGGTCGTGCAGGTCAACCAGGACCAGGGCACCGTGAAGGTTTCGGTCCGCGGCGTCGGCACCACCTCGAA TGACGAAGCGCAGGATACTTCGGTCGTCATCAATATCGACGGTGAGTACATCAACCGCCCGAACGTGATGGGCATGGCCC TGTTCGACATCGACCGGGTCGAAGTGCTGCGCGGTCCCCAGGGTACGCTCTACGGCCGCAACTCGACCGGCGGTGCAATC AACTTCATCACCCGCAAGCCCGGCAAGGAATTCGGGGTCAACGGCTCGATCAGCTACGGCAACTACAACGCGATCCGTGC CGATGCCGGTATTGATCTGCCGCTGGGCGAGATCGCCGGCCTTCGCGTCGCCGGCTTCTACGATGAGCGCGATGGCTACA GCAAGCACCCCGCAGGCGGTGGCTTCTTCGTGTTCCCGGCCTACGCCGCTGGCCGTTCTGACGACAACAAGTCGTACGGA GGCCGCGCCTCGCTCCGCCTCGAGCCGACCGATCGTCTCTCGATCAACCTGGCGGCCGAGTATTCGCACCGTAGCTTCAC CCCCGGCATCTTTGCCGCCGGCGACCTGAACGGTGCCGGCAACGGTCCCACCGGCGGTGCCTGCAACAACGGCTTCACCC AGGTTGCACCGGAATATGCGCAAGTGCTCTGCGTTCCCAGCAACACCAACCTGCTCTCGAAGGTCGACCGCAGCAATTAT GCAGCGCCGCTCTTCGGCATCGGCCATGTCAGCGATCACACCTGGGCCGCACGCGGACGTATCGAATATGAGCTGAGCGA CGCGGCAACGATCACCTACATTGGCGGCTATCGCAAGTACTCGGGCGATCCCGGTCGCCTGACTCTGCCGACGATCTATC AGTCGTTCGGCTACCAGGATGAAGCCAAGACGCAGAGCCACGAACTGCGCATCAACGGCACGGTCGGCGGCGTGGTCTAT CAGGTCGGCGGCTTCTACTTCAAGGAAGACCTGGCCCGCGAAAGCGGCTTCATGCTGCCCAGCTTCGTCTTCGCCGACCC GCTCAATGATCCCAGCCTGTTCGGCAAGCCGGGCACGTTCCTCAGCTACTTCGGCCGCTACGTCAAAAGCGACAGCAAAT CGGTCTTCGGTCAGGTCGAGGTTCCGCTGGGCGACAAGCTGACCGCGATCGGTGGCCTGCGCTATACCGACAACAAGCGC AACGCGACCTATCTCAACGTCGACCCCTTCCGCTTCAGCCTTGAGACCTTCTCGCTCGTACCGGACCCGTACATCGTCGG CGCCGGTCCAGGCCGGAAGGACTTCAGCAAGGTGATGTATCTCACCACCATTCCGCTCAAGAGCAGCGACAGCAAGGTCA CGTGGCTGGCTGGCCTGAACTTCAAGCCGAACAGCGACACCCTGATCTTCGTCAAGGCGTCGACCGGCTTCAAAGCTGGC GGTTTCGACTCGGTCGGCACCTACAAGCCCGAGACCAACACCGCTTTCGAAGGCGGCTGGAAGCAGACCTTCGGTGATCA TGGGCAGCACCAGTTCAACCTTGGCGCGTTCTACTACGACTACAAGGACCTGCAGGTTTCCGTACTGCTTGATACCGCCA TCGGCGGCCAGATCTTCAATGCCGGCAAGGCGAAGATCTGGGGCATCGAAGCCTCGGCCGACATTGCCCTGGACGATCGC ACCAACTTCCATGCCTCGGCCAACTACCTGAATGCCGAATACAAGGAGCTGCTCGCGCAGTTCAACGTGTTCGACACCAC CGGCGAGATCAACGGCGTTGGCGATCTCGATCCCAACACCGACGGCATCCAGCAGCCGAACTTTGCCGGCAACCGCCCGC CGTTCTCTCCGGAATGGGTGCTGACCGCCTCGCTCGACCACACTTTCCCGCTGGGCGATATGGGTGGCCTGACGGCGCGG GTGAACACCACCTTCAAGAGCAAGTACTTCACCGACTTCTACAACTATCGCGACGGCACGCAGAGCGCGCTCAGCCAGAC CGACGCGAGCCTCGAATACAAGCCCGAGAACGAGAAGTTCTCGATCACGGCGTTCGTCAAGAACATCGAAGGCACGCGCC CGCTGACCTACGGCAGCTTCGTTTCGGCCGGACCGGACGACATCTTCAACTGGCAGTTCGGCACGCCGCGCACCTACGGC GTCCGCCTCGCGGTCGACTTCTAA
Upstream 100 bases:
>100_bases AACGTTCTGCACTCAATAGAATTTAGGTTCTAGTTTTTAGAATTCTAATCTGTTAAACGGCGGCGCCGAACGTGGCGCAA CATGGGGAGGAAATACCATC
Downstream 100 bases:
>100_bases GTCGTACTCAGGTTCGCAAAACAGAAAGGGGAGCGGTTCGCCGCTCCCCTTTTTTGTTGCCGGAAGCCCCGGAGCGTTCA GCCCCAGGACGGGTCCTTGC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 807; Mature: 806
Protein sequence:
>807_residues MPKSTYTRALLAGACALAFALPAHAQDAAQATEAEDTNPNVIIVTAQNRAQNLNDVPIKIDVVSGEELQKAGFASMNDVG QIAPVVQVNQDQGTVKVSVRGVGTTSNDEAQDTSVVINIDGEYINRPNVMGMALFDIDRVEVLRGPQGTLYGRNSTGGAI NFITRKPGKEFGVNGSISYGNYNAIRADAGIDLPLGEIAGLRVAGFYDERDGYSKHPAGGGFFVFPAYAAGRSDDNKSYG GRASLRLEPTDRLSINLAAEYSHRSFTPGIFAAGDLNGAGNGPTGGACNNGFTQVAPEYAQVLCVPSNTNLLSKVDRSNY AAPLFGIGHVSDHTWAARGRIEYELSDAATITYIGGYRKYSGDPGRLTLPTIYQSFGYQDEAKTQSHELRINGTVGGVVY QVGGFYFKEDLARESGFMLPSFVFADPLNDPSLFGKPGTFLSYFGRYVKSDSKSVFGQVEVPLGDKLTAIGGLRYTDNKR NATYLNVDPFRFSLETFSLVPDPYIVGAGPGRKDFSKVMYLTTIPLKSSDSKVTWLAGLNFKPNSDTLIFVKASTGFKAG GFDSVGTYKPETNTAFEGGWKQTFGDHGQHQFNLGAFYYDYKDLQVSVLLDTAIGGQIFNAGKAKIWGIEASADIALDDR TNFHASANYLNAEYKELLAQFNVFDTTGEINGVGDLDPNTDGIQQPNFAGNRPPFSPEWVLTASLDHTFPLGDMGGLTAR VNTTFKSKYFTDFYNYRDGTQSALSQTDASLEYKPENEKFSITAFVKNIEGTRPLTYGSFVSAGPDDIFNWQFGTPRTYG VRLAVDF
Sequences:
>Translated_807_residues MPKSTYTRALLAGACALAFALPAHAQDAAQATEAEDTNPNVIIVTAQNRAQNLNDVPIKIDVVSGEELQKAGFASMNDVG QIAPVVQVNQDQGTVKVSVRGVGTTSNDEAQDTSVVINIDGEYINRPNVMGMALFDIDRVEVLRGPQGTLYGRNSTGGAI NFITRKPGKEFGVNGSISYGNYNAIRADAGIDLPLGEIAGLRVAGFYDERDGYSKHPAGGGFFVFPAYAAGRSDDNKSYG GRASLRLEPTDRLSINLAAEYSHRSFTPGIFAAGDLNGAGNGPTGGACNNGFTQVAPEYAQVLCVPSNTNLLSKVDRSNY AAPLFGIGHVSDHTWAARGRIEYELSDAATITYIGGYRKYSGDPGRLTLPTIYQSFGYQDEAKTQSHELRINGTVGGVVY QVGGFYFKEDLARESGFMLPSFVFADPLNDPSLFGKPGTFLSYFGRYVKSDSKSVFGQVEVPLGDKLTAIGGLRYTDNKR NATYLNVDPFRFSLETFSLVPDPYIVGAGPGRKDFSKVMYLTTIPLKSSDSKVTWLAGLNFKPNSDTLIFVKASTGFKAG GFDSVGTYKPETNTAFEGGWKQTFGDHGQHQFNLGAFYYDYKDLQVSVLLDTAIGGQIFNAGKAKIWGIEASADIALDDR TNFHASANYLNAEYKELLAQFNVFDTTGEINGVGDLDPNTDGIQQPNFAGNRPPFSPEWVLTASLDHTFPLGDMGGLTAR VNTTFKSKYFTDFYNYRDGTQSALSQTDASLEYKPENEKFSITAFVKNIEGTRPLTYGSFVSAGPDDIFNWQFGTPRTYG VRLAVDF >Mature_806_residues PKSTYTRALLAGACALAFALPAHAQDAAQATEAEDTNPNVIIVTAQNRAQNLNDVPIKIDVVSGEELQKAGFASMNDVGQ IAPVVQVNQDQGTVKVSVRGVGTTSNDEAQDTSVVINIDGEYINRPNVMGMALFDIDRVEVLRGPQGTLYGRNSTGGAIN FITRKPGKEFGVNGSISYGNYNAIRADAGIDLPLGEIAGLRVAGFYDERDGYSKHPAGGGFFVFPAYAAGRSDDNKSYGG RASLRLEPTDRLSINLAAEYSHRSFTPGIFAAGDLNGAGNGPTGGACNNGFTQVAPEYAQVLCVPSNTNLLSKVDRSNYA APLFGIGHVSDHTWAARGRIEYELSDAATITYIGGYRKYSGDPGRLTLPTIYQSFGYQDEAKTQSHELRINGTVGGVVYQ VGGFYFKEDLARESGFMLPSFVFADPLNDPSLFGKPGTFLSYFGRYVKSDSKSVFGQVEVPLGDKLTAIGGLRYTDNKRN ATYLNVDPFRFSLETFSLVPDPYIVGAGPGRKDFSKVMYLTTIPLKSSDSKVTWLAGLNFKPNSDTLIFVKASTGFKAGG FDSVGTYKPETNTAFEGGWKQTFGDHGQHQFNLGAFYYDYKDLQVSVLLDTAIGGQIFNAGKAKIWGIEASADIALDDRT NFHASANYLNAEYKELLAQFNVFDTTGEINGVGDLDPNTDGIQQPNFAGNRPPFSPEWVLTASLDHTFPLGDMGGLTARV NTTFKSKYFTDFYNYRDGTQSALSQTDASLEYKPENEKFSITAFVKNIEGTRPLTYGSFVSAGPDDIFNWQFGTPRTYGV RLAVDF
Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=161, Percent_Identity=31.055900621118, Blast_Score=81, Evalue=3e-16, Organism=Escherichia coli, GI1790405, Length=218, Percent_Identity=30.2752293577982, Blast_Score=77, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 87392; Mature: 87261
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKSTYTRALLAGACALAFALPAHAQDAAQATEAEDTNPNVIIVTAQNRAQNLNDVPIKI CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEE DVVSGEELQKAGFASMNDVGQIAPVVQVNQDQGTVKVSVRGVGTTSNDEAQDTSVVINID EEECCHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEC GEYINRPNVMGMALFDIDRVEVLRGPQGTLYGRNSTGGAINFITRKPGKEFGVNGSISYG CCCCCCCCEEEEEEEECCHHHEEECCCCEEEECCCCCCEEEEEECCCCHHHCCCCEEECC NYNAIRADAGIDLPLGEIAGLRVAGFYDERDGYSKHPAGGGFFVFPAYAAGRSDDNKSYG CCEEEEECCCCCCCHHHHCCEEEEEEECCCCCCCCCCCCCEEEEEECEECCCCCCCCCCC GRASLRLEPTDRLSINLAAEYSHRSFTPGIFAAGDLNGAGNGPTGGACNNGFTQVAPEYA CEEEEEECCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCE QVLCVPSNTNLLSKVDRSNYAAPLFGIGHVSDHTWAARGRIEYELSDAATITYIGGYRKY EEEEECCCCHHHHHHCCCCCCCCEEEECCCCCCCEEECCEEEEEECCCEEEEEECCEEEC SGDPGRLTLPTIYQSFGYQDEAKTQSHELRINGTVGGVVYQVGGFYFKEDLARESGFMLP CCCCCCEEHHHHHHHCCCCCCCCCCCEEEEECCEECEEEEECCCCHHHHHHHHHCCCCCC SFVFADPLNDPSLFGKPGTFLSYFGRYVKSDSKSVFGQVEVPLGDKLTAIGGLRYTDNKR HHHEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEECCEEEECCCC NATYLNVDPFRFSLETFSLVPDPYIVGAGPGRKDFSKVMYLTTIPLKSSDSKVTWLAGLN CEEEEECCCEEEEEEEEEECCCCEEEECCCCHHHHCEEEEEEEECCCCCCCEEEEEEECC FKPNSDTLIFVKASTGFKAGGFDSVGTYKPETNTAFEGGWKQTFGDHGQHQFNLGAFYYD CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEEEEEE YKDLQVSVLLDTAIGGQIFNAGKAKIWGIEASADIALDDRTNFHASANYLNAEYKELLAQ CCCEEEEEEEEECCCCEEECCCCEEEEEEECCCEEEECCCCCCEECCCCCCHHHHHHHHH FNVFDTTGEINGVGDLDPNTDGIQQPNFAGNRPPFSPEWVLTASLDHTFPLGDMGGLTAR CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEE VNTTFKSKYFTDFYNYRDGTQSALSQTDASLEYKPENEKFSITAFVKNIEGTRPLTYGSF EEEEECHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCEEEEEEEECCCCCCCEEECCC VSAGPDDIFNWQFGTPRTYGVRLAVDF CCCCCCCCCEECCCCCCEEEEEEEEEC >Mature Secondary Structure PKSTYTRALLAGACALAFALPAHAQDAAQATEAEDTNPNVIIVTAQNRAQNLNDVPIKI CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEE DVVSGEELQKAGFASMNDVGQIAPVVQVNQDQGTVKVSVRGVGTTSNDEAQDTSVVINID EEECCHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEC GEYINRPNVMGMALFDIDRVEVLRGPQGTLYGRNSTGGAINFITRKPGKEFGVNGSISYG CCCCCCCCEEEEEEEECCHHHEEECCCCEEEECCCCCCEEEEEECCCCHHHCCCCEEECC NYNAIRADAGIDLPLGEIAGLRVAGFYDERDGYSKHPAGGGFFVFPAYAAGRSDDNKSYG CCEEEEECCCCCCCHHHHCCEEEEEEECCCCCCCCCCCCCEEEEEECEECCCCCCCCCCC GRASLRLEPTDRLSINLAAEYSHRSFTPGIFAAGDLNGAGNGPTGGACNNGFTQVAPEYA CEEEEEECCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCE QVLCVPSNTNLLSKVDRSNYAAPLFGIGHVSDHTWAARGRIEYELSDAATITYIGGYRKY EEEEECCCCHHHHHHCCCCCCCCEEEECCCCCCCEEECCEEEEEECCCEEEEEECCEEEC SGDPGRLTLPTIYQSFGYQDEAKTQSHELRINGTVGGVVYQVGGFYFKEDLARESGFMLP CCCCCCEEHHHHHHHCCCCCCCCCCCEEEEECCEECEEEEECCCCHHHHHHHHHCCCCCC SFVFADPLNDPSLFGKPGTFLSYFGRYVKSDSKSVFGQVEVPLGDKLTAIGGLRYTDNKR HHHEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEECCEEEECCCC NATYLNVDPFRFSLETFSLVPDPYIVGAGPGRKDFSKVMYLTTIPLKSSDSKVTWLAGLN CEEEEECCCEEEEEEEEEECCCCEEEECCCCHHHHCEEEEEEEECCCCCCCEEEEEEECC FKPNSDTLIFVKASTGFKAGGFDSVGTYKPETNTAFEGGWKQTFGDHGQHQFNLGAFYYD CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEEEEEE YKDLQVSVLLDTAIGGQIFNAGKAKIWGIEASADIALDDRTNFHASANYLNAEYKELLAQ CCCEEEEEEEEECCCCEEECCCCEEEEEEECCCEEEECCCCCCEECCCCCCHHHHHHHHH FNVFDTTGEINGVGDLDPNTDGIQQPNFAGNRPPFSPEWVLTASLDHTFPLGDMGGLTAR CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEE VNTTFKSKYFTDFYNYRDGTQSALSQTDASLEYKPENEKFSITAFVKNIEGTRPLTYGSF EEEEECHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCEEEEEEEECCCCCCCEEECCC VSAGPDDIFNWQFGTPRTYGVRLAVDF CCCCCCCCCEECCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406279; 2174861 [H]