Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is exoN [H]
Identifier: 87198475
GI number: 87198475
Start: 492864
End: 493802
Strand: Direct
Name: exoN [H]
Synonym: Saro_0450
Alternate gene names: 87198475
Gene position: 492864-493802 (Clockwise)
Preceding gene: 87198473
Following gene: 87198477
Centisome position: 13.84
GC content: 63.9
Gene sequence:
>939_bases TTGCATCAAGAATATGAAACAACCTTCGGATATCGCGGCGGGATGACATTGAAAGAACAGCGAAAGCCCATCCGCAAGGC GGTCTTTCCGGTCGCGGGGCTGGGAACCCGCTTCCTGCCTGCGACAAAGGCGATCCCGAAGGAAATGCTGCCGATCATCG ACCGCCCGCTGATCCAGTACGCGGTCGACGAGGCGCGCGAGGCCGGCATCGAGCAGCTCATCTTCGTGACCGGTCGCGGC AAGACCGCGATCGTCGAGCATTTCGACACGGCCTACGAACTCGAACACACGATGCGCGATCGCGGCAAGGTACTCGATAT TCTCGCGCCGACGCGGATCCAGCCAGGCAATCTCGTGACCGTGCGGCAGCAGGTGCCGATGGGTCTTGGCCACGCCATCT GGTGCGCGCGCGCGGTCGTGGGGGATGAACCTTTCGCGATCTTCCTTCCGGACGAAATGATGATCGGCACGCCCGGCTGC ATGAAGCAGATGGTCGATGCCTACGAAGACGTCGGCGGCAATCTCATTTCCGTGCTCGAAGTGCCCGCGGCAGAAGTGTC GAGCTACGGCGTCATCGCTCCCGGCGCCCGGGTTTCCGACACGCTGACCGAAGTGAAGGGCCTGGTCGAGAAGCCGAAGC GCGAGGACGCACCTTCAAACCTCATCATTTCCGGCCGCTACATCCTCCAGCCGGAAGTCATGCGCACTCTCGAATGCCAG GAAAGCGGCGCGGGCGGCGAAGTGCAGTTGACCGATGCGATGGCGCGGATGATCGGCCGCCAGCCGTTCCACGCCGTGAC CTTCGCCGGGCGACGCTACGACTGCGGCAGCAAGGCCGGCTTCGTCGAGGCGACGCTCGCCCTGGCGCTCGAGCGCGAGG ATATGGCCGAAGACGTGCGCGCGATCATGCGTCGCCTGCTGGCACAAAGCGGCGGCTAG
Upstream 100 bases:
>100_bases CATCGCGGTCGTTTAGCCTGTTTGCCGGTCCGTGCAAGCGGCAGCGATACGGCGGCAGCGGACCGAACTTCGGTTGACAT TTGCCGCCCGGGATTGTGCA
Downstream 100 bases:
>100_bases GGCGAAGATCCGATCAGGGCGCGCGCAGGTATGCCAGGCACATCCGGCCGAGCTCGCGCTTGAGGACTTCCCAGTCATAG TCGTGCGCCGCTTCGCCTGA
Product: UDP-glucose pyrophosphorylase
Products: NA
Alternate protein names: Alpha-D-glucosyl-1-phosphate uridylyltransferase; UDP-glucose pyrophosphorylase; UDPGP; Uridine diphosphoglucose pyrophosphorylase [H]
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MHQEYETTFGYRGGMTLKEQRKPIRKAVFPVAGLGTRFLPATKAIPKEMLPIIDRPLIQYAVDEAREAGIEQLIFVTGRG KTAIVEHFDTAYELEHTMRDRGKVLDILAPTRIQPGNLVTVRQQVPMGLGHAIWCARAVVGDEPFAIFLPDEMMIGTPGC MKQMVDAYEDVGGNLISVLEVPAAEVSSYGVIAPGARVSDTLTEVKGLVEKPKREDAPSNLIISGRYILQPEVMRTLECQ ESGAGGEVQLTDAMARMIGRQPFHAVTFAGRRYDCGSKAGFVEATLALALEREDMAEDVRAIMRRLLAQSGG
Sequences:
>Translated_312_residues MHQEYETTFGYRGGMTLKEQRKPIRKAVFPVAGLGTRFLPATKAIPKEMLPIIDRPLIQYAVDEAREAGIEQLIFVTGRG KTAIVEHFDTAYELEHTMRDRGKVLDILAPTRIQPGNLVTVRQQVPMGLGHAIWCARAVVGDEPFAIFLPDEMMIGTPGC MKQMVDAYEDVGGNLISVLEVPAAEVSSYGVIAPGARVSDTLTEVKGLVEKPKREDAPSNLIISGRYILQPEVMRTLECQ ESGAGGEVQLTDAMARMIGRQPFHAVTFAGRRYDCGSKAGFVEATLALALEREDMAEDVRAIMRRLLAQSGG >Mature_312_residues MHQEYETTFGYRGGMTLKEQRKPIRKAVFPVAGLGTRFLPATKAIPKEMLPIIDRPLIQYAVDEAREAGIEQLIFVTGRG KTAIVEHFDTAYELEHTMRDRGKVLDILAPTRIQPGNLVTVRQQVPMGLGHAIWCARAVVGDEPFAIFLPDEMMIGTPGC MKQMVDAYEDVGGNLISVLEVPAAEVSSYGVIAPGARVSDTLTEVKGLVEKPKREDAPSNLIISGRYILQPEVMRTLECQ ESGAGGEVQLTDAMARMIGRQPFHAVTFAGRRYDCGSKAGFVEATLALALEREDMAEDVRAIMRRLLAQSGG
Specific function: May Play A Role In Stationary Phase Survival. [C]
COG id: COG1210
COG function: function code M; UDP-glucose pyrophosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UDPGP type 2 family [H]
Homologues:
Organism=Escherichia coli, GI1787488, Length=296, Percent_Identity=40.8783783783784, Blast_Score=214, Evalue=5e-57, Organism=Escherichia coli, GI1788355, Length=296, Percent_Identity=38.5135135135135, Blast_Score=191, Evalue=4e-50, Organism=Escherichia coli, GI1788351, Length=271, Percent_Identity=25.4612546125461, Blast_Score=69, Evalue=5e-13,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005835 [H]
Pfam domain/function: PF00483 NTP_transferase [H]
EC number: =2.7.7.9 [H]
Molecular weight: Translated: 34203; Mature: 34203
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHQEYETTFGYRGGMTLKEQRKPIRKAVFPVAGLGTRFLPATKAIPKEMLPIIDRPLIQY CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH AVDEAREAGIEQLIFVTGRGKTAIVEHFDTAYELEHTMRDRGKVLDILAPTRIQPGNLVT HHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCEEE VRQQVPMGLGHAIWCARAVVGDEPFAIFLPDEMMIGTPGCMKQMVDAYEDVGGNLISVLE EHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCEECCHHHHHHHHHHHHHCCCCEEEHHH VPAAEVSSYGVIAPGARVSDTLTEVKGLVEKPKREDAPSNLIISGRYILQPEVMRTLECQ CCHHHHCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECEEEECHHHHHHHHHH ESGAGGEVQLTDAMARMIGRQPFHAVTFAGRRYDCGSKAGFVEATLALALEREDMAEDVR CCCCCCEEEHHHHHHHHHCCCCCHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH AIMRRLLAQSGG HHHHHHHHHCCC >Mature Secondary Structure MHQEYETTFGYRGGMTLKEQRKPIRKAVFPVAGLGTRFLPATKAIPKEMLPIIDRPLIQY CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH AVDEAREAGIEQLIFVTGRGKTAIVEHFDTAYELEHTMRDRGKVLDILAPTRIQPGNLVT HHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCEEE VRQQVPMGLGHAIWCARAVVGDEPFAIFLPDEMMIGTPGCMKQMVDAYEDVGGNLISVLE EHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCEECCHHHHHHHHHHHHHCCCCEEEHHH VPAAEVSSYGVIAPGARVSDTLTEVKGLVEKPKREDAPSNLIISGRYILQPEVMRTLECQ CCHHHHCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECEEEECHHHHHHHHHH ESGAGGEVQLTDAMARMIGRQPFHAVTFAGRRYDCGSKAGFVEATLALALEREDMAEDVR CCCCCCEEEHHHHHHHHHCCCCCHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH AIMRRLLAQSGG HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8226645; 8226646; 8246891; 11481431 [H]