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The map label for this gene is ybbK [C]

Identifier: 87198427

GI number: 87198427

Start: 441880

End: 442653

Strand: Direct

Name: ybbK [C]

Synonym: Saro_0402

Alternate gene names: 87198427

Gene position: 441880-442653 (Clockwise)

Preceding gene: 87198426

Following gene: 87198428

Centisome position: 12.41

GC content: 59.56

Gene sequence:

>774_bases
ATGGGCATGCTCGGAGAACTCGCATTTTACCTTCCGCTAATATTCCTGGCGCTGCTGTTCCTGATGGCGGCCGTGAAGAT
CCTGCGGGAATATGAGCGCGGGGTCGTCTTCACGCTGGGTCGCTTTACCGGCGTGAAAGGACCGGGCCTCATCCTCCTCG
TTCCATTCGTCCAGCAGATCGTCCGGATGGATCTGAGAACGATCGTGCTCGACGTGCCTACCCAGGACGTAATCTCGCGT
GACAACGTCTCGGTGAAGGTCAACGCAGTCATCTATTTCCGGGTCATCGCGCCGGACCTGGCCACGATCCAGGTAGAGAA
CTTCATGCAGGCGACCAGCGAGCTGGCACAGACCACGCTGCGTTCGGTCCTCGGCAAGCACGAGCTCGACGAGATGCTGG
CCGAGCGCGACAAGCTCAACGCAGATATCCAGGAAATCCTCGATGCCCAGACCGATGCGTGGGGCATCAAGGTCGCGAAC
GTCGAGATCAAACACGTTGATATCGACGAATCCATGGTCCGCGCCATCGCGCGGCAAGCGGAAGCCGAACGCGAACGGCG
AGCCAAGGTCATCAATGCCGAAGGTGAGCAGCAGGCAGCGCAGAAGCTTCTGGAGGCGGCTGAAATCCTCGGACAGCGCC
CTGAGGCCATGCAGCTGCGTTATCTGTCGACGCTCAACGTCATTGCGGGCGAGAAGAGCTCGACAATCGTATTTCCCTTC
CCGCTGGACTTCATGGAACTGCTCAAGGGGAGCAAGCAGGCACAGGAGGGCTAG

Upstream 100 bases:

>100_bases
AGCGAGCTTCACGCGGGACAGGAGGTCCGCATTATCCGGCTTCAGGGCCTGACAGTGGAGGTTGAACCCGCAAATTAGCT
CTCGGGAAAGGAGACAGGCC

Downstream 100 bases:

>100_bases
CCATTCCGGAAAAACATCGCGGAGTGATTGATCTAAGGGTCCGGAGCCTCAGAGATCTTTTCCACCAATTCGATCCCTCG
CCCATGGTCGGGCGCGACCT

Product: SPFH domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MGMLGELAFYLPLIFLALLFLMAAVKILREYERGVVFTLGRFTGVKGPGLILLVPFVQQIVRMDLRTIVLDVPTQDVISR
DNVSVKVNAVIYFRVIAPDLATIQVENFMQATSELAQTTLRSVLGKHELDEMLAERDKLNADIQEILDAQTDAWGIKVAN
VEIKHVDIDESMVRAIARQAEAERERRAKVINAEGEQQAAQKLLEAAEILGQRPEAMQLRYLSTLNVIAGEKSSTIVFPF
PLDFMELLKGSKQAQEG

Sequences:

>Translated_257_residues
MGMLGELAFYLPLIFLALLFLMAAVKILREYERGVVFTLGRFTGVKGPGLILLVPFVQQIVRMDLRTIVLDVPTQDVISR
DNVSVKVNAVIYFRVIAPDLATIQVENFMQATSELAQTTLRSVLGKHELDEMLAERDKLNADIQEILDAQTDAWGIKVAN
VEIKHVDIDESMVRAIARQAEAERERRAKVINAEGEQQAAQKLLEAAEILGQRPEAMQLRYLSTLNVIAGEKSSTIVFPF
PLDFMELLKGSKQAQEG
>Mature_256_residues
GMLGELAFYLPLIFLALLFLMAAVKILREYERGVVFTLGRFTGVKGPGLILLVPFVQQIVRMDLRTIVLDVPTQDVISRD
NVSVKVNAVIYFRVIAPDLATIQVENFMQATSELAQTTLRSVLGKHELDEMLAERDKLNADIQEILDAQTDAWGIKVANV
EIKHVDIDESMVRAIARQAEAERERRAKVINAEGEQQAAQKLLEAAEILGQRPEAMQLRYLSTLNVIAGEKSSTIVFPFP
LDFMELLKGSKQAQEG

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=262, Percent_Identity=43.5114503816794, Blast_Score=208, Evalue=3e-54,
Organism=Homo sapiens, GI221316744, Length=255, Percent_Identity=44.7058823529412, Blast_Score=208, Evalue=4e-54,
Organism=Homo sapiens, GI21686995, Length=255, Percent_Identity=44.7058823529412, Blast_Score=207, Evalue=5e-54,
Organism=Homo sapiens, GI7657615, Length=255, Percent_Identity=34.5098039215686, Blast_Score=153, Evalue=1e-37,
Organism=Homo sapiens, GI7305503, Length=204, Percent_Identity=36.2745098039216, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI20149563, Length=157, Percent_Identity=35.031847133758, Blast_Score=94, Evalue=8e-20,
Organism=Homo sapiens, GI38016907, Length=69, Percent_Identity=50.7246376811594, Blast_Score=75, Evalue=6e-14,
Organism=Escherichia coli, GI1786697, Length=193, Percent_Identity=40.9326424870466, Blast_Score=145, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17569493, Length=253, Percent_Identity=46.2450592885375, Blast_Score=216, Evalue=9e-57,
Organism=Caenorhabditis elegans, GI193209764, Length=245, Percent_Identity=47.3469387755102, Blast_Score=215, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI25153583, Length=247, Percent_Identity=44.9392712550607, Blast_Score=207, Evalue=6e-54,
Organism=Caenorhabditis elegans, GI71987612, Length=247, Percent_Identity=44.9392712550607, Blast_Score=206, Evalue=8e-54,
Organism=Caenorhabditis elegans, GI71987621, Length=248, Percent_Identity=44.758064516129, Blast_Score=206, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI17569499, Length=247, Percent_Identity=44.1295546558704, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17570459, Length=225, Percent_Identity=45.7777777777778, Blast_Score=197, Evalue=6e-51,
Organism=Caenorhabditis elegans, GI17569497, Length=248, Percent_Identity=39.9193548387097, Blast_Score=190, Evalue=5e-49,
Organism=Caenorhabditis elegans, GI17570161, Length=234, Percent_Identity=44.8717948717949, Blast_Score=186, Evalue=9e-48,
Organism=Caenorhabditis elegans, GI193210507, Length=234, Percent_Identity=44.8717948717949, Blast_Score=186, Evalue=9e-48,
Organism=Caenorhabditis elegans, GI32566490, Length=237, Percent_Identity=44.7257383966245, Blast_Score=184, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI71989948, Length=225, Percent_Identity=44.4444444444444, Blast_Score=182, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI71989955, Length=183, Percent_Identity=45.3551912568306, Blast_Score=146, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI71989963, Length=121, Percent_Identity=47.9338842975207, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI32564147, Length=180, Percent_Identity=33.8888888888889, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17542664, Length=167, Percent_Identity=25.1497005988024, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24657857, Length=258, Percent_Identity=46.8992248062016, Blast_Score=211, Evalue=4e-55,
Organism=Drosophila melanogaster, GI62484448, Length=256, Percent_Identity=47.265625, Blast_Score=211, Evalue=5e-55,
Organism=Drosophila melanogaster, GI281365664, Length=256, Percent_Identity=47.265625, Blast_Score=210, Evalue=6e-55,
Organism=Drosophila melanogaster, GI62484274, Length=256, Percent_Identity=47.265625, Blast_Score=210, Evalue=8e-55,
Organism=Drosophila melanogaster, GI45556022, Length=250, Percent_Identity=46, Blast_Score=206, Evalue=1e-53,
Organism=Drosophila melanogaster, GI18860517, Length=240, Percent_Identity=43.3333333333333, Blast_Score=198, Evalue=3e-51,
Organism=Drosophila melanogaster, GI28573263, Length=242, Percent_Identity=39.6694214876033, Blast_Score=186, Evalue=1e-47,
Organism=Drosophila melanogaster, GI281361633, Length=236, Percent_Identity=37.7118644067797, Blast_Score=178, Evalue=3e-45,
Organism=Drosophila melanogaster, GI281361631, Length=236, Percent_Identity=37.7118644067797, Blast_Score=178, Evalue=3e-45,
Organism=Drosophila melanogaster, GI21356845, Length=234, Percent_Identity=36.3247863247863, Blast_Score=171, Evalue=3e-43,
Organism=Drosophila melanogaster, GI281361635, Length=182, Percent_Identity=39.010989010989, Blast_Score=141, Evalue=4e-34,
Organism=Drosophila melanogaster, GI45550506, Length=177, Percent_Identity=37.2881355932203, Blast_Score=121, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28695; Mature: 28564

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMLGELAFYLPLIFLALLFLMAAVKILREYERGVVFTLGRFTGVKGPGLILLVPFVQQI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHCCCCCCCCEEEHHHHHHH
VRMDLRTIVLDVPTQDVISRDNVSVKVNAVIYFRVIAPDLATIQVENFMQATSELAQTTL
HHHHHHHHEEECCCHHHHCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
RSVLGKHELDEMLAERDKLNADIQEILDAQTDAWGIKVANVEIKHVDIDESMVRAIARQA
HHHHCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHH
EAERERRAKVINAEGEQQAAQKLLEAAEILGQRPEAMQLRYLSTLNVIAGEKSSTIVFPF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
PLDFMELLKGSKQAQEG
CHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
GMLGELAFYLPLIFLALLFLMAAVKILREYERGVVFTLGRFTGVKGPGLILLVPFVQQI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHCCCCCCCCEEEHHHHHHH
VRMDLRTIVLDVPTQDVISRDNVSVKVNAVIYFRVIAPDLATIQVENFMQATSELAQTTL
HHHHHHHHEEECCCHHHHCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
RSVLGKHELDEMLAERDKLNADIQEILDAQTDAWGIKVANVEIKHVDIDESMVRAIARQA
HHHHCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHH
EAERERRAKVINAEGEQQAAQKLLEAAEILGQRPEAMQLRYLSTLNVIAGEKSSTIVFPF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
PLDFMELLKGSKQAQEG
CHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]