Click here to switch to the map view.

The map label for this gene is 87198426

Identifier: 87198426

GI number: 87198426

Start: 440475

End: 441857

Strand: Direct

Name: 87198426

Synonym: Saro_0401

Alternate gene names: NA

Gene position: 440475-441857 (Clockwise)

Preceding gene: 87198423

Following gene: 87198427

Centisome position: 12.37

GC content: 64.35

Gene sequence:

>1383_bases
ATGGACACCATCGTACGCCACAGCTGGCTCCGCCTGTTCCTGCTATCGCTTCTGTTGGCAGGTTTCGCGCAGGCGTGGGC
CAACGCCCAGACGCAGCCCGGCAGAGATGAGGTGCCCGTTCTCACGATCGAAGGGGCCATCGGCCCCGCGACGGCAGACT
ACGTCGCGGGCGGCATAGCCCGGGCGGCCGAGCAGGGCGCGCCGATGGTGATCATCCGCATGGATACTCCCGGTGGGCTC
GACACCTCGATGCGCGAGATCATTCGCGCCATCCTGGGTTCTCCGGTTCCCGTTGTGACATATGTCAGTCCCAGCGGCGC
GCGCGCTGCGAGCGCTGGCGCTTTCATACTGACTGCGAGTCACGTGGCGGCAATGGCCCCGGGGACCAATGTCGGGGCGG
CGACACCGGTTCAATTGGGAGCGCCGGCCGCACCCTCAACGCCCAAATCCAGCGATCAGCAGGCCGACGACAAGGGCACC
TCATCTCCAGCGAAATCTGGCGGTGCCAGCGAGGCCAAGGCCCTCAACGACGCCATTGCCTACATTCGCTCACTCGCGGA
AATGCGGGGGCGCAATGCGGACTGGGCGGAAGCGGCAGTGCGCGAAGCGGCGAGCCTCTCGGCCAAGAGCGCCCTTGAGC
AAAAGGTCATCGATATCGTGGCCCGAGACGACGGTGATCTGCTCGCCCAGATCAATGGTCTCACCGTCGCCTTGGGCAAT
GGACAAGTCCGGCTCCAGACAGACGGAGTACGCTTGACGGAGGTCCTTCCCGATTGGCGTACCCGGCTACTGTCAGCGAT
CACCAATCCGAACATCGCCCTGATCCTGATGATGATTGGCGCCTACGGGCTGCTGTTCGAGTTCATGAACCCCGGCGCGC
TGTACCCCGGTACAATCGGGGCCATCAGCCTTTTGCTCGGTTTTTATGCCCTGTCCGTCCTTCCGGTGAACTATGCCGGG
CTCGCTCTCATCGTGCTCGGCCTGGCACTGATGGGGGCCGAAGCGTTCTCGCCCTCCTTCGGCATCCTGGGCATCGGTGG
AATGATAGCCTTCGTTCTCGGCGCGACCATCATGTTCGATACAGATGTCCCGCAATTCCGTGTCGCGCTCCCGGTGTTGG
CGGCGATCGCCGTCGCCAGTCTCGGCGCAACTGTGCTGACCATGCGACTGGCGCTACGGTCACGCCGGAGCAGCGTTGCG
ACCGGCCGCGAGGAAATGATCGGTGCGACCGGCAGCGTGCTGGATTGGCAGGGAACCGGCGGACATGTCCGGGTCCATGG
CGAGCGCTGGAACGCCCGCGCCGTCAGCGAGCTTCACGCGGGACAGGAGGTCCGCATTATCCGGCTTCAGGGCCTGACAG
TGGAGGTTGAACCCGCAAATTAG

Upstream 100 bases:

>100_bases
AATTAGGCAGCGCAATCCTGCGGGACGCAATTTCCAGATAAACCGGACAAGATCGCTGCAATAGTCTACAATGCCCCCTC
ACCGCCGAGGGATCCATGCC

Downstream 100 bases:

>100_bases
CTCTCGGGAAAGGAGACAGGCCATGGGCATGCTCGGAGAACTCGCATTTTACCTTCCGCTAATATTCCTGGCGCTGCTGT
TCCTGATGGCGGCCGTGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-Bound Serine Protease; Nodulation Protein NfeD; Nodulation Efficiency Protein D; Nodulation Competitiveness Protein NfeD; NfeD Protein; Membrane Bound Peptidase; Transmembrane Protein; NfeD Family Protein; Serine Protease; NfeD-Like Family; Protease/Transporter; Membrane-Bound Serine Protease-Like Protein; Membrane-Bound ClpP-Class Protease; Nodulation Efficiency Family Protein; Membrane-Bound Serine Protease ClpP Class; S49 Family Serine Protease; Membrane-Bound Serine Protease NfeD-Like Protein; NfeD Nodulation Like Protein Membrane Protein; Nodulation Efficiency Protein Nfed; NfeD-Like Membrane-Bound Serine Protease; Nfed Family Protein; Nodulation Protein; Membrane-Bound Protease; Nodulation Protein Nfed; Membrane-Bound Serine Protease Protein

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MDTIVRHSWLRLFLLSLLLAGFAQAWANAQTQPGRDEVPVLTIEGAIGPATADYVAGGIARAAEQGAPMVIIRMDTPGGL
DTSMREIIRAILGSPVPVVTYVSPSGARAASAGAFILTASHVAAMAPGTNVGAATPVQLGAPAAPSTPKSSDQQADDKGT
SSPAKSGGASEAKALNDAIAYIRSLAEMRGRNADWAEAAVREAASLSAKSALEQKVIDIVARDDGDLLAQINGLTVALGN
GQVRLQTDGVRLTEVLPDWRTRLLSAITNPNIALILMMIGAYGLLFEFMNPGALYPGTIGAISLLLGFYALSVLPVNYAG
LALIVLGLALMGAEAFSPSFGILGIGGMIAFVLGATIMFDTDVPQFRVALPVLAAIAVASLGATVLTMRLALRSRRSSVA
TGREEMIGATGSVLDWQGTGGHVRVHGERWNARAVSELHAGQEVRIIRLQGLTVEVEPAN

Sequences:

>Translated_460_residues
MDTIVRHSWLRLFLLSLLLAGFAQAWANAQTQPGRDEVPVLTIEGAIGPATADYVAGGIARAAEQGAPMVIIRMDTPGGL
DTSMREIIRAILGSPVPVVTYVSPSGARAASAGAFILTASHVAAMAPGTNVGAATPVQLGAPAAPSTPKSSDQQADDKGT
SSPAKSGGASEAKALNDAIAYIRSLAEMRGRNADWAEAAVREAASLSAKSALEQKVIDIVARDDGDLLAQINGLTVALGN
GQVRLQTDGVRLTEVLPDWRTRLLSAITNPNIALILMMIGAYGLLFEFMNPGALYPGTIGAISLLLGFYALSVLPVNYAG
LALIVLGLALMGAEAFSPSFGILGIGGMIAFVLGATIMFDTDVPQFRVALPVLAAIAVASLGATVLTMRLALRSRRSSVA
TGREEMIGATGSVLDWQGTGGHVRVHGERWNARAVSELHAGQEVRIIRLQGLTVEVEPAN
>Mature_460_residues
MDTIVRHSWLRLFLLSLLLAGFAQAWANAQTQPGRDEVPVLTIEGAIGPATADYVAGGIARAAEQGAPMVIIRMDTPGGL
DTSMREIIRAILGSPVPVVTYVSPSGARAASAGAFILTASHVAAMAPGTNVGAATPVQLGAPAAPSTPKSSDQQADDKGT
SSPAKSGGASEAKALNDAIAYIRSLAEMRGRNADWAEAAVREAASLSAKSALEQKVIDIVARDDGDLLAQINGLTVALGN
GQVRLQTDGVRLTEVLPDWRTRLLSAITNPNIALILMMIGAYGLLFEFMNPGALYPGTIGAISLLLGFYALSVLPVNYAG
LALIVLGLALMGAEAFSPSFGILGIGGMIAFVLGATIMFDTDVPQFRVALPVLAAIAVASLGATVLTMRLALRSRRSSVA
TGREEMIGATGSVLDWQGTGGHVRVHGERWNARAVSELHAGQEVRIIRLQGLTVEVEPAN

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47743; Mature: 47743

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTIVRHSWLRLFLLSLLLAGFAQAWANAQTQPGRDEVPVLTIEGAIGPATADYVAGGIA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHH
RAAEQGAPMVIIRMDTPGGLDTSMREIIRAILGSPVPVVTYVSPSGARAASAGAFILTAS
HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEHH
HVAAMAPGTNVGAATPVQLGAPAAPSTPKSSDQQADDKGTSSPAKSGGASEAKALNDAIA
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
YIRSLAEMRGRNADWAEAAVREAASLSAKSALEQKVIDIVARDDGDLLAQINGLTVALGN
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEECC
GQVRLQTDGVRLTEVLPDWRTRLLSAITNPNIALILMMIGAYGLLFEFMNPGALYPGTIG
CEEEEEECCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
AISLLLGFYALSVLPVNYAGLALIVLGLALMGAEAFSPSFGILGIGGMIAFVLGATIMFD
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEE
TDVPQFRVALPVLAAIAVASLGATVLTMRLALRSRRSSVATGREEMIGATGSVLDWQGTG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEECCCC
GHVRVHGERWNARAVSELHAGQEVRIIRLQGLTVEVEPAN
CEEEEECCCCCHHHHHHHHCCCCEEEEEEECEEEEEECCC
>Mature Secondary Structure
MDTIVRHSWLRLFLLSLLLAGFAQAWANAQTQPGRDEVPVLTIEGAIGPATADYVAGGIA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHH
RAAEQGAPMVIIRMDTPGGLDTSMREIIRAILGSPVPVVTYVSPSGARAASAGAFILTAS
HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEHH
HVAAMAPGTNVGAATPVQLGAPAAPSTPKSSDQQADDKGTSSPAKSGGASEAKALNDAIA
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
YIRSLAEMRGRNADWAEAAVREAASLSAKSALEQKVIDIVARDDGDLLAQINGLTVALGN
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEECC
GQVRLQTDGVRLTEVLPDWRTRLLSAITNPNIALILMMIGAYGLLFEFMNPGALYPGTIG
CEEEEEECCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
AISLLLGFYALSVLPVNYAGLALIVLGLALMGAEAFSPSFGILGIGGMIAFVLGATIMFD
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEE
TDVPQFRVALPVLAAIAVASLGATVLTMRLALRSRRSSVATGREEMIGATGSVLDWQGTG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEECCCC
GHVRVHGERWNARAVSELHAGQEVRIIRLQGLTVEVEPAN
CEEEEECCCCCHHHHHHHHCCCCEEEEEEECEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA