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The map label for this gene is ydcN [C]

Identifier: 87198393

GI number: 87198393

Start: 402133

End: 402363

Strand: Direct

Name: ydcN [C]

Synonym: Saro_0368

Alternate gene names: 87198393

Gene position: 402133-402363 (Clockwise)

Preceding gene: 87198383

Following gene: 87198398

Centisome position: 11.29

GC content: 64.5

Gene sequence:

>231_bases
ATGGACATCCGCAAGCTCTTCGGGACCAACGTGAAGCGGTATCGCGAGGCAGCCGGCTTGAGCCAGGCCGAGATCGCCGC
GCGTATGGGCGTCGACAGGGCTTATGTCAGCGCCATTGAGCGCGGGCTGCAGAATGCGACCCTTCTTTCGATCTGGGAAA
TCGCGCAGGCGCTCGAGGTTCGGCCGGTTGCGCTGCTCGAGGAACCGGACTTGTCGGCGCCCACCCAGTGA

Upstream 100 bases:

>100_bases
GAACAAGTCCAGAGTGCAGGCGAGCGGCTCCGCATCGCTGAAAACAAGCGAGTATTATAATACGTCGCACTATAATACGC
GACTGGTTTCTAAGCTGCGG

Downstream 100 bases:

>100_bases
CAGCTGAAAGCCCCGCCCGGCACTGCCGGGCGAGGCTTGGTGGTTGCCATCAGTCGTTGTTCGACTTGCGGGCCCGCGAC
CAGATCAGGTTGTAGGTCTT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MDIRKLFGTNVKRYREAAGLSQAEIAARMGVDRAYVSAIERGLQNATLLSIWEIAQALEVRPVALLEEPDLSAPTQ

Sequences:

>Translated_76_residues
MDIRKLFGTNVKRYREAAGLSQAEIAARMGVDRAYVSAIERGLQNATLLSIWEIAQALEVRPVALLEEPDLSAPTQ
>Mature_76_residues
MDIRKLFGTNVKRYREAAGLSQAEIAARMGVDRAYVSAIERGLQNATLLSIWEIAQALEVRPVALLEEPDLSAPTQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 8384; Mature: 8384

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIRKLFGTNVKRYREAAGLSQAEIAARMGVDRAYVSAIERGLQNATLLSIWEIAQALEV
CCCHHHHCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
RPVALLEEPDLSAPTQ
CCHHEECCCCCCCCCC
>Mature Secondary Structure
MDIRKLFGTNVKRYREAAGLSQAEIAARMGVDRAYVSAIERGLQNATLLSIWEIAQALEV
CCCHHHHCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
RPVALLEEPDLSAPTQ
CCHHEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]