Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198398
Identifier: 87198398
GI number: 87198398
Start: 404582
End: 405697
Strand: Direct
Name: 87198398
Synonym: Saro_0373
Alternate gene names: NA
Gene position: 404582-405697 (Clockwise)
Preceding gene: 87198393
Following gene: 87198399
Centisome position: 11.36
GC content: 61.29
Gene sequence:
>1116_bases TTGCCTGTTGCCTATCACGAAGGACGTTTCCCGCCCGCAACGCTTGACCTGGGCGCGCTGTTTCCGTTGGTCGGGCCAGC CAATGCTGCCATTGCGCGCTATGAGGGTGTCCTCTCCGGCATTCCCAATCCCGACATTCTGCTTTCGCCGTTGACGGCTC GCGAAGCCGTGCTCTCCAGCAAAATTGAGGGGACGCAGGTAACGCTTGGCGAGGTGCTGGAGTTCGAGGCGCAGGGGCAT CTGTTTGACGAGAGCACGCCCAAGAAAGCCGACGCACGCGAAGTCTTGAACTATCGCGCGGCCCTGCGCGAAGCGGACAG CCTGATGGCAGAGCTTCCGCTGTCGCAACGCCTGATCAAGGCCACGCATCGGGTTCTGATGGATGGTGTGCGCGGCCGTC ACAAGGATCCGGGCGAATACCGCCGCATCCCCAACTGGATCGGTCCGGACGGTTGCACCATCGAACAGGCGCGCTTCGTG CCGCCAGGTGCCGATCGCATCGAGGCCGCCATGGTGGGCTGGGAAGCCTATATTCATGCCGATGCGCCGGATAGGCTGGT GCAACTGGCGATCGTTCATGCCGAGTTTGAATCGATCCACCCCTTCCTTGATGGCAACGGGCGCATCGGGCGACTGATCA TCCCGCTGTTCCTTTATGCCCATGGGTTGTTGTCGCGCCCCAATTTCTACCTGTCGGAATACCTCGAAGCCAATCGGGAT GAGTATTACGACCGGATGCTGGCCGTTTCCCGCGACGACGATTGGAGCGGATGGGTGGCATTCTTCCTGCGCGGCATCAT CGCCCAGGCCGAAGCCAACACTCTGAAGGCCCAGGCAATTCTGGCGCTGCATCAGGACAAGCGCGATTGGGTGGTCGAGA TCACGCACTCGCAATATGCCGTGCGAGCTTTGGACTGGATCTTCCAGCGCCCGATCTTTCAGACACCGGACTTCATCGCC TCGGCCCAGATCCCGCCAGCGACCGCCCGCAAGATTATCCGCGACCTGCGCGACAACGGCTTGCTGCGTGAACTGGTGCC CGCCTCCGGGCGGGCACCCGCAACTTTCGTGTTTTCGGAATTGCTGAACATTGCGGAGGGACGCGAAGCGTTTTGA
Upstream 100 bases:
>100_bases CTACTTTGCGATCATCAAATGGTGTAGCTGTTGATAGACGATCATCAAAGCTCGTTGCGATTCGTGCGCGCGAGCCTACG CCCGTCTAACGGAGACGCCA
Downstream 100 bases:
>100_bases CCCACAGCTCGCTTCAAAGCGGCAGGCTTAGCAAAATGGGAGCCATTCCTGGGCGGAGGCGTCACCTCGGCACTGCCGTT CGACTTGAAGGGGCTCGGAT
Product: filamentation induced by cAMP protein Fic
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 371; Mature: 370
Protein sequence:
>371_residues MPVAYHEGRFPPATLDLGALFPLVGPANAAIARYEGVLSGIPNPDILLSPLTAREAVLSSKIEGTQVTLGEVLEFEAQGH LFDESTPKKADAREVLNYRAALREADSLMAELPLSQRLIKATHRVLMDGVRGRHKDPGEYRRIPNWIGPDGCTIEQARFV PPGADRIEAAMVGWEAYIHADAPDRLVQLAIVHAEFESIHPFLDGNGRIGRLIIPLFLYAHGLLSRPNFYLSEYLEANRD EYYDRMLAVSRDDDWSGWVAFFLRGIIAQAEANTLKAQAILALHQDKRDWVVEITHSQYAVRALDWIFQRPIFQTPDFIA SAQIPPATARKIIRDLRDNGLLRELVPASGRAPATFVFSELLNIAEGREAF
Sequences:
>Translated_371_residues MPVAYHEGRFPPATLDLGALFPLVGPANAAIARYEGVLSGIPNPDILLSPLTAREAVLSSKIEGTQVTLGEVLEFEAQGH LFDESTPKKADAREVLNYRAALREADSLMAELPLSQRLIKATHRVLMDGVRGRHKDPGEYRRIPNWIGPDGCTIEQARFV PPGADRIEAAMVGWEAYIHADAPDRLVQLAIVHAEFESIHPFLDGNGRIGRLIIPLFLYAHGLLSRPNFYLSEYLEANRD EYYDRMLAVSRDDDWSGWVAFFLRGIIAQAEANTLKAQAILALHQDKRDWVVEITHSQYAVRALDWIFQRPIFQTPDFIA SAQIPPATARKIIRDLRDNGLLRELVPASGRAPATFVFSELLNIAEGREAF >Mature_370_residues PVAYHEGRFPPATLDLGALFPLVGPANAAIARYEGVLSGIPNPDILLSPLTAREAVLSSKIEGTQVTLGEVLEFEAQGHL FDESTPKKADAREVLNYRAALREADSLMAELPLSQRLIKATHRVLMDGVRGRHKDPGEYRRIPNWIGPDGCTIEQARFVP PGADRIEAAMVGWEAYIHADAPDRLVQLAIVHAEFESIHPFLDGNGRIGRLIIPLFLYAHGLLSRPNFYLSEYLEANRDE YYDRMLAVSRDDDWSGWVAFFLRGIIAQAEANTLKAQAILALHQDKRDWVVEITHSQYAVRALDWIFQRPIFQTPDFIAS AQIPPATARKIIRDLRDNGLLRELVPASGRAPATFVFSELLNIAEGREAF
Specific function: Unknown
COG id: COG3177
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fido domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003812 [H]
Pfam domain/function: PF02661 Fic [H]
EC number: NA
Molecular weight: Translated: 41422; Mature: 41291
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVAYHEGRFPPATLDLGALFPLVGPANAAIARYEGVLSGIPNPDILLSPLTAREAVLSS CCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHH KIEGTQVTLGEVLEFEAQGHLFDESTPKKADAREVLNYRAALREADSLMAELPLSQRLIK CCCCCEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH ATHRVLMDGVRGRHKDPGEYRRIPNWIGPDGCTIEQARFVPPGADRIEAAMVGWEAYIHA HHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEC DAPDRLVQLAIVHAEFESIHPFLDGNGRIGRLIIPLFLYAHGLLSRPNFYLSEYLEANRD CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHH EYYDRMLAVSRDDDWSGWVAFFLRGIIAQAEANTLKAQAILALHQDKRDWVVEITHSQYA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHH VRALDWIFQRPIFQTPDFIASAQIPPATARKIIRDLRDNGLLRELVPASGRAPATFVFSE HHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHH LLNIAEGREAF HHHHHCCCCCC >Mature Secondary Structure PVAYHEGRFPPATLDLGALFPLVGPANAAIARYEGVLSGIPNPDILLSPLTAREAVLSS CCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHH KIEGTQVTLGEVLEFEAQGHLFDESTPKKADAREVLNYRAALREADSLMAELPLSQRLIK CCCCCEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH ATHRVLMDGVRGRHKDPGEYRRIPNWIGPDGCTIEQARFVPPGADRIEAAMVGWEAYIHA HHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEC DAPDRLVQLAIVHAEFESIHPFLDGNGRIGRLIIPLFLYAHGLLSRPNFYLSEYLEANRD CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHH EYYDRMLAVSRDDDWSGWVAFFLRGIIAQAEANTLKAQAILALHQDKRDWVVEITHSQYA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHH VRALDWIFQRPIFQTPDFIASAQIPPATARKIIRDLRDNGLLRELVPASGRAPATFVFSE HHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHH LLNIAEGREAF HHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]