Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87198315
Identifier: 87198315
GI number: 87198315
Start: 312028
End: 313980
Strand: Direct
Name: 87198315
Synonym: Saro_0290
Alternate gene names: NA
Gene position: 312028-313980 (Clockwise)
Preceding gene: 87198307
Following gene: 87198316
Centisome position: 8.76
GC content: 65.44
Gene sequence:
>1953_bases ATGTTCAAGACGCTCGCGGCAGCACCGCTCCTTCTCGCCCTTTCCGTTTCAACTCAGGCTCTTGCGGCGAACTCTGCGCC GATGGCCGTGCCGATCGCGCAGACCGTGCCGGACGCGCAGGACGTGGCCTATCCGGGCACAATGACGCTCGACATCGACG CGTCGGACGTCGTGCGCGGGGCCTATCGCGTGACCCAGACCATTCCGGTGGTGGCGGGCGCGAAGGAGCTGATCCTGCTT TACCCGCAGTGGCTGCCCGGCAACCACGGGCCGCGCGGGCCGCTGGCCGAACTCGTCGGCGTGCAGTTCTTCGTCGACGG CAAGCCGGTGGAATGGAAGCGCGACCGGGTCGAGGTCTATGCCTTCCACGTCACCCTGCCGGCCGGCGCGAAGGAGGTCG TGGCCAAGCTGATCCACACCTCGCCGCTGCAATCTTCGGAAGGGCGCATTACGATGACACCCGAGATGCTCAACCTGCAG TGGGAGAAGATGAGCCTCTATCCCGCCGGTCACTATGTCCGCCGCATTCGCGTGAAGCCGACCGTAACCCTGCCGCAGGG CTGGACGCCCGCCACCGCGCTCGACGGAATGAGCATGAGCGGCAACCGCGCGACCTGGGCCGAAACCGACTACGAGACGC TGGTCGATTCGCCGATCTTCGCGGGCAAGAACTTCCGCAAGTGGGACCTCGGGCAGAACGTCACGCTCAACGTCGTCTCC GACAAGCCGGAGCAGCTCGAGGCCAAGCCCGAGCATATCGCCGCGCACAAGGCGCTGGTCGAGGAAGCGCGGATCGCGTT CGGCGCGAACCATTTCGACCACTACGAGTTCCTGCTGGCGCTGTCGGACAAGATCGGCGGCATCGGGCTGGAACATCACC GGTCGAGCGAGAACCAGCTCGAACCCGAGGCCTTCACCGAATGGGCCAAGCAGGAATGGGACCGCAATCTGCTGCCGCAC GAGTATTCGCACTCGTGGTCGGGCAAGTTCCGCCGTCCGTCGCGCCTGTGGACGCCCGACTATCGCCAGCCGATGCAGGG CGACCTGCTGTGGACCTACGAAGGGCAGGACCAGTTCTGGGGCGCGGTGCTGGCCAGCCGTTCGGGCATGCAGGGCAAGG ACATGGTGCTGGGCATGCTGGCGGCATGGGCGGGCGGCTTCACCCAGCAGCCGGGCCGCGAATGGCGTTCGGTCGAGGAT ACCGGGTTCGACCCGGTCTTCGCCTCGCGCAAGCCGAAGCCCTACTCGTCGCTGGCCCGCAACGAGGACTACTACACCGA AGGCGCGCTGGTCTGGCTGGAAATCGACCAGATCCTTCGCGAAGGCACCGGCGGCAAGAAGTCCATCGACGACTTCGCCA AGTCGTTCTTCGGCATGAATCCGGGGGACTGGGGCCAGATCCCGTTCGAGGTGGACGAGATCGTCACCAAGCTGAACGCG CTTTATCCCTATGACTGGGCCAAGCTGATCGACACCCGCATCAACCAGCCGGGCCAGCCCGCGCCGCTGAACGGGATCGA GAAGGGCGGCTACAAGCTGGTCTGGAAGGAAGAGCCCAATCCCTACATGAAGGCGGCGATCGATTTCGGCAAAGGCCTGA GCCTTTCCAACTCGATCGGCATTTCGCTCGACAAGGACGGCAAGGTCACCGGCACGCGCTGGGACAGCCCGGCCTTCAAT GCGGGAATCGTGACCGGTACGCAGATCATGGCGGTGAACGGCACCGCCTATAGCGCGGATGACCTCAAGAAGGCGATCAC CGCAGCCAAGGGTGACAAGGGCCAGCCGCTCGAACTGCTGGTCAAGCGCGGCAGCCGGTTCGAGACCGTGAAGCTCGATT ACCGGGATGGCCTGCGTTATCCGTGGCTCGAGCGCGTGGCGCCGGGCAAGGCGCCGACCGGGCTCGACCTGCTGCTCGAA CCCCGGCGCCCCGGCGCGGCGAAGAAGAAGTAA
Upstream 100 bases:
>100_bases GGTGCGCGCGATTAGCCCGAAAGGGACAAAACGGAAAGGTTGCAAAAAGGTGGCGGTGACTGGTTGCGGATGCGACCGCT TCGCGTCATGACTGACACCC
Downstream 100 bases:
>100_bases GGGCGTGGCGCGCGGCGGGGCAAAGCTGGGCAACCGGCTGGCACCCGCGCGCTTCGTGCTGTTTCTCGTGCTGCTGGTCG CCGCGTTCGCCGGCGACCGG
Product: glycyl aminopeptidase
Products: NA
Alternate protein names: Peptidase M; Protease; Glycyl Aminopeptidase; M61 Family Peptidase; M61 Glycyl Aminopeptidase; Metallopeptidase; Glycyl Aminopeptidase Protein; PDZ Domain Family Protein; Trypsin-Like Serine Protease; Protease With C-Terminal PDZ Domain-Containing Protein; Pdz/Dhr/Glgf; Aminopeptidase N Family Protein; Aminopeptidase; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein; Protease With C-Terminal PDZ Domain
Number of amino acids: Translated: 650; Mature: 650
Protein sequence:
>650_residues MFKTLAAAPLLLALSVSTQALAANSAPMAVPIAQTVPDAQDVAYPGTMTLDIDASDVVRGAYRVTQTIPVVAGAKELILL YPQWLPGNHGPRGPLAELVGVQFFVDGKPVEWKRDRVEVYAFHVTLPAGAKEVVAKLIHTSPLQSSEGRITMTPEMLNLQ WEKMSLYPAGHYVRRIRVKPTVTLPQGWTPATALDGMSMSGNRATWAETDYETLVDSPIFAGKNFRKWDLGQNVTLNVVS DKPEQLEAKPEHIAAHKALVEEARIAFGANHFDHYEFLLALSDKIGGIGLEHHRSSENQLEPEAFTEWAKQEWDRNLLPH EYSHSWSGKFRRPSRLWTPDYRQPMQGDLLWTYEGQDQFWGAVLASRSGMQGKDMVLGMLAAWAGGFTQQPGREWRSVED TGFDPVFASRKPKPYSSLARNEDYYTEGALVWLEIDQILREGTGGKKSIDDFAKSFFGMNPGDWGQIPFEVDEIVTKLNA LYPYDWAKLIDTRINQPGQPAPLNGIEKGGYKLVWKEEPNPYMKAAIDFGKGLSLSNSIGISLDKDGKVTGTRWDSPAFN AGIVTGTQIMAVNGTAYSADDLKKAITAAKGDKGQPLELLVKRGSRFETVKLDYRDGLRYPWLERVAPGKAPTGLDLLLE PRRPGAAKKK
Sequences:
>Translated_650_residues MFKTLAAAPLLLALSVSTQALAANSAPMAVPIAQTVPDAQDVAYPGTMTLDIDASDVVRGAYRVTQTIPVVAGAKELILL YPQWLPGNHGPRGPLAELVGVQFFVDGKPVEWKRDRVEVYAFHVTLPAGAKEVVAKLIHTSPLQSSEGRITMTPEMLNLQ WEKMSLYPAGHYVRRIRVKPTVTLPQGWTPATALDGMSMSGNRATWAETDYETLVDSPIFAGKNFRKWDLGQNVTLNVVS DKPEQLEAKPEHIAAHKALVEEARIAFGANHFDHYEFLLALSDKIGGIGLEHHRSSENQLEPEAFTEWAKQEWDRNLLPH EYSHSWSGKFRRPSRLWTPDYRQPMQGDLLWTYEGQDQFWGAVLASRSGMQGKDMVLGMLAAWAGGFTQQPGREWRSVED TGFDPVFASRKPKPYSSLARNEDYYTEGALVWLEIDQILREGTGGKKSIDDFAKSFFGMNPGDWGQIPFEVDEIVTKLNA LYPYDWAKLIDTRINQPGQPAPLNGIEKGGYKLVWKEEPNPYMKAAIDFGKGLSLSNSIGISLDKDGKVTGTRWDSPAFN AGIVTGTQIMAVNGTAYSADDLKKAITAAKGDKGQPLELLVKRGSRFETVKLDYRDGLRYPWLERVAPGKAPTGLDLLLE PRRPGAAKKK >Mature_650_residues MFKTLAAAPLLLALSVSTQALAANSAPMAVPIAQTVPDAQDVAYPGTMTLDIDASDVVRGAYRVTQTIPVVAGAKELILL YPQWLPGNHGPRGPLAELVGVQFFVDGKPVEWKRDRVEVYAFHVTLPAGAKEVVAKLIHTSPLQSSEGRITMTPEMLNLQ WEKMSLYPAGHYVRRIRVKPTVTLPQGWTPATALDGMSMSGNRATWAETDYETLVDSPIFAGKNFRKWDLGQNVTLNVVS DKPEQLEAKPEHIAAHKALVEEARIAFGANHFDHYEFLLALSDKIGGIGLEHHRSSENQLEPEAFTEWAKQEWDRNLLPH EYSHSWSGKFRRPSRLWTPDYRQPMQGDLLWTYEGQDQFWGAVLASRSGMQGKDMVLGMLAAWAGGFTQQPGREWRSVED TGFDPVFASRKPKPYSSLARNEDYYTEGALVWLEIDQILREGTGGKKSIDDFAKSFFGMNPGDWGQIPFEVDEIVTKLNA LYPYDWAKLIDTRINQPGQPAPLNGIEKGGYKLVWKEEPNPYMKAAIDFGKGLSLSNSIGISLDKDGKVTGTRWDSPAFN AGIVTGTQIMAVNGTAYSADDLKKAITAAKGDKGQPLELLVKRGSRFETVKLDYRDGLRYPWLERVAPGKAPTGLDLLLE PRRPGAAKKK
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72078; Mature: 72078
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKTLAAAPLLLALSVSTQALAANSAPMAVPIAQTVPDAQDVAYPGTMTLDIDASDVVRG CCCHHHHHHHHEEEECCHHHHHCCCCCCEEEHHHHCCCHHHCCCCCEEEEECCHHHHHHH AYRVTQTIPVVAGAKELILLYPQWLPGNHGPRGPLAELVGVQFFVDGKPVEWKRDRVEVY HHHHHHHCEEECCCCEEEEEEECCCCCCCCCCCHHHHHHCEEEEECCCCCCCCCCEEEEE AFHVTLPAGAKEVVAKLIHTSPLQSSEGRITMTPEMLNLQWEKMSLYPAGHYVRRIRVKP EEEEECCCCHHHHHHHHHHCCCCCCCCCEEEECHHHHCEEEEEEEECCCCCEEEEEEECC TVTLPQGWTPATALDGMSMSGNRATWAETDYETLVDSPIFAGKNFRKWDLGQNVTLNVVS EEECCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEECCCCCEEEEEEC DKPEQLEAKPEHIAAHKALVEEARIAFGANHFDHYEFLLALSDKIGGIGLEHHRSSENQL CCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEHHHCCCCCCCHHCCCCCCCC EPEAFTEWAKQEWDRNLLPHEYSHSWSGKFRRPSRLWTPDYRQPMQGDLLWTYEGQDQFW CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHH GAVLASRSGMQGKDMVLGMLAAWAGGFTQQPGREWRSVEDTGFDPVFASRKPKPYSSLAR HHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHC NEDYYTEGALVWLEIDQILREGTGGKKSIDDFAKSFFGMNPGDWGQIPFEVDEIVTKLNA CCCCEECCEEEEEEHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH LYPYDWAKLIDTRINQPGQPAPLNGIEKGGYKLVWKEEPNPYMKAAIDFGKGLSLSNSIG CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCC ISLDKDGKVTGTRWDSPAFNAGIVTGTQIMAVNGTAYSADDLKKAITAAKGDKGQPLELL EEECCCCCEECCCCCCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHH VKRGSRFETVKLDYRDGLRYPWLERVAPGKAPTGLDLLLEPRRPGAAKKK HHCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCC >Mature Secondary Structure MFKTLAAAPLLLALSVSTQALAANSAPMAVPIAQTVPDAQDVAYPGTMTLDIDASDVVRG CCCHHHHHHHHEEEECCHHHHHCCCCCCEEEHHHHCCCHHHCCCCCEEEEECCHHHHHHH AYRVTQTIPVVAGAKELILLYPQWLPGNHGPRGPLAELVGVQFFVDGKPVEWKRDRVEVY HHHHHHHCEEECCCCEEEEEEECCCCCCCCCCCHHHHHHCEEEEECCCCCCCCCCEEEEE AFHVTLPAGAKEVVAKLIHTSPLQSSEGRITMTPEMLNLQWEKMSLYPAGHYVRRIRVKP EEEEECCCCHHHHHHHHHHCCCCCCCCCEEEECHHHHCEEEEEEEECCCCCEEEEEEECC TVTLPQGWTPATALDGMSMSGNRATWAETDYETLVDSPIFAGKNFRKWDLGQNVTLNVVS EEECCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEECCCCCEEEEEEC DKPEQLEAKPEHIAAHKALVEEARIAFGANHFDHYEFLLALSDKIGGIGLEHHRSSENQL CCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEHHHCCCCCCCHHCCCCCCCC EPEAFTEWAKQEWDRNLLPHEYSHSWSGKFRRPSRLWTPDYRQPMQGDLLWTYEGQDQFW CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHH GAVLASRSGMQGKDMVLGMLAAWAGGFTQQPGREWRSVEDTGFDPVFASRKPKPYSSLAR HHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHC NEDYYTEGALVWLEIDQILREGTGGKKSIDDFAKSFFGMNPGDWGQIPFEVDEIVTKLNA CCCCEECCEEEEEEHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH LYPYDWAKLIDTRINQPGQPAPLNGIEKGGYKLVWKEEPNPYMKAAIDFGKGLSLSNSIG CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCC ISLDKDGKVTGTRWDSPAFNAGIVTGTQIMAVNGTAYSADDLKKAITAAKGDKGQPLELL EEECCCCCEECCCCCCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHH VKRGSRFETVKLDYRDGLRYPWLERVAPGKAPTGLDLLLEPRRPGAAKKK HHCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA