Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198302
Identifier: 87198302
GI number: 87198302
Start: 295554
End: 296258
Strand: Direct
Name: 87198302
Synonym: Saro_0277
Alternate gene names: NA
Gene position: 295554-296258 (Clockwise)
Preceding gene: 87198300
Following gene: 87198304
Centisome position: 8.3
GC content: 69.93
Gene sequence:
>705_bases ATGTTCCGCCGCATCGCCCTGCCCGCGATCTGCGCCTTGCTGGCTTTCCAGCCGGTGGCGGCCGCCTCGCGCGAGGTGAC GACGCGGACCTGGACCGAAAACGGCGTCACCTGGACCGAGACAACGGTGGTCGAGGTGGAGGAACCGGGCTCCGAACGCC TCGTCGGCCTGCCCCGCGCGGACGTTCGCGGCGTGGCGAGCTTCGGGCCGTTCGAGGTGCTGGACGCGGCCCGCGCCGCG CTCGTTGCCGAGACGGACAGCCATTCGCCCGCCGATTTCCAGACGATGCTGCGCGCCTTCCCCGGCATCCGCGTGCTGGA AATGCCCGACTGTCCGGGCACGGTCGACGATTTCGCCAACCTGCGGCTTGGCCGGATGATCCGCGCCAGGGGCATCGCCA CCCACGTGCCCGAGCATGGCTCGGTGCGTTCAGGCGCGGTCGAGCTGTTCCTTGCCGGCGCGAGCCGGAGCGCGGCGGCA GACGCTTCCTTCGTCGTCCATTCCTGGATCGACGAGGACGGCCGCGAACCCGATGACTTCGCCGCCGGCGACCCGGTCAA CCGCGCCTATCTCGACTATTACCGCGAGATGGGCCTCGCGGCCGAACAGGCAGCGGCGTTCTATGCGCTGACCAACTCCG TACCGAACGAGCAGGTGCTGATGCTCGGGACCGGCGACCTGGCGCGCTACGCGGCGCTGAACTGA
Upstream 100 bases:
>100_bases AAAGCCGGGCGGCTAAGGGATCGCCCGCAGAACATGGTGAACCGGATTTAACCGGCTTCCTTCGCACTTCGGCAAGCCGC GCGCGCGGAAAAGACGGATC
Downstream 100 bases:
>100_bases GCCGCGCTCAAGGGGTGCCAGGGCCGGACTGTCGCCTCAGTGCGCCGCGCCCCACGACAGGCCGGTGCCGATCTCGACGC CCAGCGGCACGCTGAGCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: Hydrolase Alpha/Beta Fold Family Protein; Hydrolase Alpha/Beta Fold Family
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MFRRIALPAICALLAFQPVAAASREVTTRTWTENGVTWTETTVVEVEEPGSERLVGLPRADVRGVASFGPFEVLDAARAA LVAETDSHSPADFQTMLRAFPGIRVLEMPDCPGTVDDFANLRLGRMIRARGIATHVPEHGSVRSGAVELFLAGASRSAAA DASFVVHSWIDEDGREPDDFAAGDPVNRAYLDYYREMGLAAEQAAAFYALTNSVPNEQVLMLGTGDLARYAALN
Sequences:
>Translated_234_residues MFRRIALPAICALLAFQPVAAASREVTTRTWTENGVTWTETTVVEVEEPGSERLVGLPRADVRGVASFGPFEVLDAARAA LVAETDSHSPADFQTMLRAFPGIRVLEMPDCPGTVDDFANLRLGRMIRARGIATHVPEHGSVRSGAVELFLAGASRSAAA DASFVVHSWIDEDGREPDDFAAGDPVNRAYLDYYREMGLAAEQAAAFYALTNSVPNEQVLMLGTGDLARYAALN >Mature_234_residues MFRRIALPAICALLAFQPVAAASREVTTRTWTENGVTWTETTVVEVEEPGSERLVGLPRADVRGVASFGPFEVLDAARAA LVAETDSHSPADFQTMLRAFPGIRVLEMPDCPGTVDDFANLRLGRMIRARGIATHVPEHGSVRSGAVELFLAGASRSAAA DASFVVHSWIDEDGREPDDFAAGDPVNRAYLDYYREMGLAAEQAAAFYALTNSVPNEQVLMLGTGDLARYAALN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25214; Mature: 25214
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFRRIALPAICALLAFQPVAAASREVTTRTWTENGVTWTETTVVEVEEPGSERLVGLPRA CCCHHHHHHHHHHHHHCHHHHCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCEEECCCC DVRGVASFGPFEVLDAARAALVAETDSHSPADFQTMLRAFPGIRVLEMPDCPGTVDDFAN CCCCCCCCCCHHHHHHHHHHEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHH LRLGRMIRARGIATHVPEHGSVRSGAVELFLAGASRSAAADASFVVHSWIDEDGREPDDF HHHHHHHHHCCCHHCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCC AAGDPVNRAYLDYYREMGLAAEQAAAFYALTNSVPNEQVLMLGTGDLARYAALN CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCC >Mature Secondary Structure MFRRIALPAICALLAFQPVAAASREVTTRTWTENGVTWTETTVVEVEEPGSERLVGLPRA CCCHHHHHHHHHHHHHCHHHHCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCEEECCCC DVRGVASFGPFEVLDAARAALVAETDSHSPADFQTMLRAFPGIRVLEMPDCPGTVDDFAN CCCCCCCCCCHHHHHHHHHHEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHH LRLGRMIRARGIATHVPEHGSVRSGAVELFLAGASRSAAADASFVVHSWIDEDGREPDDF HHHHHHHHHCCCHHCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCC AAGDPVNRAYLDYYREMGLAAEQAAAFYALTNSVPNEQVLMLGTGDLARYAALN CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA