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The map label for this gene is cph2 [H]

Identifier: 86751634

GI number: 86751634

Start: 5129267

End: 5130778

Strand: Reverse

Name: cph2 [H]

Synonym: RPB_4536

Alternate gene names: 86751634

Gene position: 5130778-5129267 (Counterclockwise)

Preceding gene: 86751636

Following gene: 86751631

Centisome position: 96.23

GC content: 65.34

Gene sequence:

>1512_bases
ATGCGCGGCAGTGGGCTTTTCGAACGGATCAGGCAGGAAATCGGGCGGCGGCGGCGGATGTCGCCACGCCTGCTGATCTT
CTCGTCGGTCATCACGGTGCTTGGATTTTCGGCGGTCTGCGGCAGCATCATGCTGGAGATGCGGCGCAACGCCCAGGAGC
TGGCGCGTCAGACTCAGGAAAATCTCGCCTCCACGATCAGCGCCGACATCAATCGCACCGTCGAGCTCTACGACCTCTCG
CTGCGTTCCGCGGTCAACAGCCTGGCGCTACCGCAGCTTTCGCAGGTCGACGACACCATCCGCCGCCTGATCCTGTTCGA
TCACGCGGCGACGGCGCAGCATTTCGGTGCGATCCAGGTTTTCGACGCGCAGGGAAACCTGGCGATCGATTCCGCGTCGC
GGACCCCGGACAAGATCAATCGCGCCGCAGAGCCGTATTTCACCGTGCAGCGGGATCAGCCGGATCACGGCCTGTATATC
AGCGGGCCGATGCAGCATCGTGGCGCCTATTCGATCGTGCTGAGCCGGCGCGTCTCTGGGCCGGACGGGCAATTTCTCGG
CATCGTCGCGGGCTCGATCCGCTTCAGCTATTTCCAGGAGCTGTTCAGCCGGCTGCGGCTCGCACCGCACGACGTGATCG
CGGTGATCGTGTCGGACGGCAGCCTGATCATGCGAACACCGTTCAGTCCAGAACTGCTCGGCTCCAATGTGATGGCGAAC
ATCGGCATGAGCAACATCCTGAGCCAGCGGCGCGGCTGGTTCAGTGGGCACGGCAAGCTCGACAAGATTTCCCGGATCTA
CGTGTGGGCGGACAGCACCCGGCCGCTCGTGGTGCTGGTCGGCAAATCCTGGGACGACGTCTTCAAGATGTGGCGCGAGG
AGGCGATCCGGATCGGCGCCATCCTGCTCGGGCTCGCGATCATTGTCGCCGGCTTCACCGTCTTCTTCATCCGCGAGATC
GACCGTCGCGCCGCGGCCGAACGGCGGCTGGAGGAACTGGCCACCACCGACGCGCTGACCGGGCTGACCAACCGTCGCAA
GTTCGACGTCACGATCGATCGCGAATGGCGCCGCGCGCTGCGGTCGCAGACGCCGATCGCCCTGATGATCATCGACGCCG
ATCATTTCAAGGCGTTCAACGACAGCTATGGTCACCAGGCCGGCGACCAGGTGCTGGTCGGCATCGCGCTGTGCATCGGC
GACTCCGTGCAGCGCGCCGGCGATTGCGCGGCGCGGTTCGGCGGCGAGGAATTCGCCGTGCTGCTGCCGGGGATGAATGC
AACGGCGGCGCTGGAGATGGCGGAAACGATCCGGCAGAAGGTCGAACTCTGGTCGGATGGTCAGGCTGGCGTCACCGTCA
GTGTCGGCGTCGCCAGCATGATGCCCGGTCCGGCGCAGCACTGGTCGGTGCTGTTCGAGGCCGCCGACAAGGCGCTCTAC
GCGGCCAAGGATCTCGGCCGAAACCGCTCCGTGGTCGCGGCGAACCGCAGCGACCTCACGCTGGTCGCCTGA

Upstream 100 bases:

>100_bases
GTCGTTGTGGACGCTCACTGGTGAAATCGGGCGTTAACCGCAGGTTACGTCATGATCGCAACTTAAGCGCTCCGCAAGCT
TTGGTTGGCTAATTTTCAGC

Downstream 100 bases:

>100_bases
CCGGCGCGATCACGTCCCGAGATAGCGCTGCATGTCGGCGACGAGGCCGTCGCGCAGATCGTCGCGCCGCATCGCGAAGG
CGATGTTGGCGCGCAGGAAG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 503; Mature: 503

Protein sequence:

>503_residues
MRGSGLFERIRQEIGRRRRMSPRLLIFSSVITVLGFSAVCGSIMLEMRRNAQELARQTQENLASTISADINRTVELYDLS
LRSAVNSLALPQLSQVDDTIRRLILFDHAATAQHFGAIQVFDAQGNLAIDSASRTPDKINRAAEPYFTVQRDQPDHGLYI
SGPMQHRGAYSIVLSRRVSGPDGQFLGIVAGSIRFSYFQELFSRLRLAPHDVIAVIVSDGSLIMRTPFSPELLGSNVMAN
IGMSNILSQRRGWFSGHGKLDKISRIYVWADSTRPLVVLVGKSWDDVFKMWREEAIRIGAILLGLAIIVAGFTVFFIREI
DRRAAAERRLEELATTDALTGLTNRRKFDVTIDREWRRALRSQTPIALMIIDADHFKAFNDSYGHQAGDQVLVGIALCIG
DSVQRAGDCAARFGGEEFAVLLPGMNATAALEMAETIRQKVELWSDGQAGVTVSVGVASMMPGPAQHWSVLFEAADKALY
AAKDLGRNRSVVAANRSDLTLVA

Sequences:

>Translated_503_residues
MRGSGLFERIRQEIGRRRRMSPRLLIFSSVITVLGFSAVCGSIMLEMRRNAQELARQTQENLASTISADINRTVELYDLS
LRSAVNSLALPQLSQVDDTIRRLILFDHAATAQHFGAIQVFDAQGNLAIDSASRTPDKINRAAEPYFTVQRDQPDHGLYI
SGPMQHRGAYSIVLSRRVSGPDGQFLGIVAGSIRFSYFQELFSRLRLAPHDVIAVIVSDGSLIMRTPFSPELLGSNVMAN
IGMSNILSQRRGWFSGHGKLDKISRIYVWADSTRPLVVLVGKSWDDVFKMWREEAIRIGAILLGLAIIVAGFTVFFIREI
DRRAAAERRLEELATTDALTGLTNRRKFDVTIDREWRRALRSQTPIALMIIDADHFKAFNDSYGHQAGDQVLVGIALCIG
DSVQRAGDCAARFGGEEFAVLLPGMNATAALEMAETIRQKVELWSDGQAGVTVSVGVASMMPGPAQHWSVLFEAADKALY
AAKDLGRNRSVVAANRSDLTLVA
>Mature_503_residues
MRGSGLFERIRQEIGRRRRMSPRLLIFSSVITVLGFSAVCGSIMLEMRRNAQELARQTQENLASTISADINRTVELYDLS
LRSAVNSLALPQLSQVDDTIRRLILFDHAATAQHFGAIQVFDAQGNLAIDSASRTPDKINRAAEPYFTVQRDQPDHGLYI
SGPMQHRGAYSIVLSRRVSGPDGQFLGIVAGSIRFSYFQELFSRLRLAPHDVIAVIVSDGSLIMRTPFSPELLGSNVMAN
IGMSNILSQRRGWFSGHGKLDKISRIYVWADSTRPLVVLVGKSWDDVFKMWREEAIRIGAILLGLAIIVAGFTVFFIREI
DRRAAAERRLEELATTDALTGLTNRRKFDVTIDREWRRALRSQTPIALMIIDADHFKAFNDSYGHQAGDQVLVGIALCIG
DSVQRAGDCAARFGGEEFAVLLPGMNATAALEMAETIRQKVELWSDGQAGVTVSVGVASMMPGPAQHWSVLFEAADKALY
AAKDLGRNRSVVAANRSDLTLVA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=41.0112359550562, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1786584, Length=200, Percent_Identity=36.5, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1787262, Length=176, Percent_Identity=39.7727272727273, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI145693134, Length=156, Percent_Identity=37.1794871794872, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI87082007, Length=216, Percent_Identity=35.1851851851852, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1787802, Length=229, Percent_Identity=32.7510917030568, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=35.1851851851852, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=33.5329341317365, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788381, Length=184, Percent_Identity=34.7826086956522, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=29.6774193548387, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788956, Length=167, Percent_Identity=30.5389221556886, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87081977, Length=221, Percent_Identity=28.9592760180996, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 55508; Mature: 55508

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGSGLFERIRQEIGRRRRMSPRLLIFSSVITVLGFSAVCGSIMLEMRRNAQELARQTQE
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
NLASTISADINRTVELYDLSLRSAVNSLALPQLSQVDDTIRRLILFDHAATAQHFGAIQV
HHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHCCCEEE
FDAQGNLAIDSASRTPDKINRAAEPYFTVQRDQPDHGLYISGPMQHRGAYSIVLSRRVSG
EECCCCEEEECCCCCHHHHHHCCCCCEEEECCCCCCCEEECCCCCCCCCEEEEEEECCCC
PDGQFLGIVAGSIRFSYFQELFSRLRLAPHDVIAVIVSDGSLIMRTPFSPELLGSNVMAN
CCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECCCCHHHHCCHHHHH
IGMSNILSQRRGWFSGHGKLDKISRIYVWADSTRPLVVLVGKSWDDVFKMWREEAIRIGA
CCHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHH
ILLGLAIIVAGFTVFFIREIDRRAAAERRLEELATTDALTGLTNRRKFDVTIDREWRRAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHH
RSQTPIALMIIDADHFKAFNDSYGHQAGDQVLVGIALCIGDSVQRAGDCAARFGGEEFAV
HCCCCEEEEEEECHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEE
LLPGMNATAALEMAETIRQKVELWSDGQAGVTVSVGVASMMPGPAQHWSVLFEAADKALY
EECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHH
AAKDLGRNRSVVAANRSDLTLVA
HHHHCCCCCCEEEECCCCEEEEC
>Mature Secondary Structure
MRGSGLFERIRQEIGRRRRMSPRLLIFSSVITVLGFSAVCGSIMLEMRRNAQELARQTQE
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
NLASTISADINRTVELYDLSLRSAVNSLALPQLSQVDDTIRRLILFDHAATAQHFGAIQV
HHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHCCCEEE
FDAQGNLAIDSASRTPDKINRAAEPYFTVQRDQPDHGLYISGPMQHRGAYSIVLSRRVSG
EECCCCEEEECCCCCHHHHHHCCCCCEEEECCCCCCCEEECCCCCCCCCEEEEEEECCCC
PDGQFLGIVAGSIRFSYFQELFSRLRLAPHDVIAVIVSDGSLIMRTPFSPELLGSNVMAN
CCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECCCCHHHHCCHHHHH
IGMSNILSQRRGWFSGHGKLDKISRIYVWADSTRPLVVLVGKSWDDVFKMWREEAIRIGA
CCHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHH
ILLGLAIIVAGFTVFFIREIDRRAAAERRLEELATTDALTGLTNRRKFDVTIDREWRRAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHH
RSQTPIALMIIDADHFKAFNDSYGHQAGDQVLVGIALCIGDSVQRAGDCAARFGGEEFAV
HCCCCEEEEEEECHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEE
LLPGMNATAALEMAETIRQKVELWSDGQAGVTVSVGVASMMPGPAQHWSVLFEAADKALY
EECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHH
AAKDLGRNRSVVAANRSDLTLVA
HHHHCCCCCCEEEECCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]