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The map label for this gene is hspD [H]

Identifier: 86751631

GI number: 86751631

Start: 5126600

End: 5127076

Strand: Reverse

Name: hspD [H]

Synonym: RPB_4533

Alternate gene names: 86751631

Gene position: 5127076-5126600 (Counterclockwise)

Preceding gene: 86751634

Following gene: 86751629

Centisome position: 96.16

GC content: 64.99

Gene sequence:

>477_bases
ATGCGTACTTTCGATCTCACCCCGTTCTATCGCTCCACTGTCGGCTTCGACCGCCTGTTCAATCTGCTGGACCAGACCTC
CGCCGAGGCGGCCCCCGGCTATCCGCCCTATAATATCGAGCGGACCGGCGAGAATGCCTATCGGATCAGCGTCGCGGTCT
CCGGCTTCTCCCCGGCCGAACTGTCGATCGTGACCAAGGAAAACCAGCTCACGATCAAGGGCGAGAAGACCGCCAACGAG
AACGGCGGCAAGTCCGAGGTGCTGTATCGCGGCATCGCCGCGCGCGCCTTCGAACGGGCATTCCAGCTCGCCGACTACGT
CACGGTGAAGACCGCCAGCCTCGAGAACGGCCTGCTCCACGTCGATCTCGTGCGCGAGATTCCCGAGGCGAAGAAGCCGC
GCAGCATCCCGATCAGCACCACCGCGGTCTCCGCGCCGCAGGTGGTCGACCACGCCGGCGACAAGGCGGCGGCGTAA

Upstream 100 bases:

>100_bases
AGGCCACACCAAGGGGTCAGGAAACCGGCTCCGGCTGCACACAATGCCCGGCCCGATGGCGGGCGGGTGTCGCAACAGTC
GCTTCTAGGAGGACTACACC

Downstream 100 bases:

>100_bases
GCGCGCAGCAACTCTCGCCATCCGCATCGTCGAACGCCCCGGGAAACCGGGGCGTTTTGTTTTGGAAGCGCTGAAAGTCC
TGAACTTCGGAGCGTCGGTG

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MRTFDLTPFYRSTVGFDRLFNLLDQTSAEAAPGYPPYNIERTGENAYRISVAVSGFSPAELSIVTKENQLTIKGEKTANE
NGGKSEVLYRGIAARAFERAFQLADYVTVKTASLENGLLHVDLVREIPEAKKPRSIPISTTAVSAPQVVDHAGDKAAA

Sequences:

>Translated_158_residues
MRTFDLTPFYRSTVGFDRLFNLLDQTSAEAAPGYPPYNIERTGENAYRISVAVSGFSPAELSIVTKENQLTIKGEKTANE
NGGKSEVLYRGIAARAFERAFQLADYVTVKTASLENGLLHVDLVREIPEAKKPRSIPISTTAVSAPQVVDHAGDKAAA
>Mature_158_residues
MRTFDLTPFYRSTVGFDRLFNLLDQTSAEAAPGYPPYNIERTGENAYRISVAVSGFSPAELSIVTKENQLTIKGEKTANE
NGGKSEVLYRGIAARAFERAFQLADYVTVKTASLENGLLHVDLVREIPEAKKPRSIPISTTAVSAPQVVDHAGDKAAA

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

Organism=Escherichia coli, GI1790122, Length=139, Percent_Identity=53.9568345323741, Blast_Score=155, Evalue=9e-40,
Organism=Escherichia coli, GI87082316, Length=139, Percent_Identity=39.568345323741, Blast_Score=106, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 17176; Mature: 17176

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTFDLTPFYRSTVGFDRLFNLLDQTSAEAAPGYPPYNIERTGENAYRISVAVSGFSPAE
CCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCE
LSIVTKENQLTIKGEKTANENGGKSEVLYRGIAARAFERAFQLADYVTVKTASLENGLLH
EEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEE
VDLVREIPEAKKPRSIPISTTAVSAPQVVDHAGDKAAA
EHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MRTFDLTPFYRSTVGFDRLFNLLDQTSAEAAPGYPPYNIERTGENAYRISVAVSGFSPAE
CCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCE
LSIVTKENQLTIKGEKTANENGGKSEVLYRGIAARAFERAFQLADYVTVKTASLENGLLH
EEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEE
VDLVREIPEAKKPRSIPISTTAVSAPQVVDHAGDKAAA
EHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]