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The map label for this gene is ycjD [H]

Identifier: 86751627

GI number: 86751627

Start: 5118229

End: 5118582

Strand: Reverse

Name: ycjD [H]

Synonym: RPB_4529

Alternate gene names: 86751627

Gene position: 5118582-5118229 (Counterclockwise)

Preceding gene: 86751628

Following gene: 86751625

Centisome position: 96.0

GC content: 63.56

Gene sequence:

>354_bases
GTGCCGATTGCTACCGCCCGAACCCTCCGCAAACGCCTCACTCCGCAGGAAGCCCGGCTGTGGGTGCAACTCCGCCAGTT
GAAGTCTCGCGGCTATCACTTCCGCCGACAGGCCCCGATCGGTCGCTACATTGTCGATTTCGTCTGCTTCGGCGCAAAGA
TCGTCATCGAGGCGGACGGCGGCCAGCACGGGATGCCAGACGGTATCGCTGCCGATCAGCAGCGTGACGCATTCCTGCGC
GGCGAAGGGTTTCGCGTTCTCCGGTTCTGGAATTCGGACATCGATCGCCATTTCGACGGTGTGATGCAGACCGTCCTCGA
CGCGTTGCCACCCCCACCCGTCCGGCCCGATTAG

Upstream 100 bases:

>100_bases
CGCGGGCAGGGCGCCAGCGTCACCGCACCGACGACCATCTCGCAGCATTGACCGTTTGCGGAACTTGATCGACCCTTGCT
GATCAGCCGAGAGATCAGCC

Downstream 100 bases:

>100_bases
CATCGGGCCGTCCACCCTCCCCACAAGGGGGAGGGAAAGGAAGCCGCGCACCAGTGGATCGTCGCCCTCACGCATTCCTC
GCCATCAATCCCCCGTCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MPIATARTLRKRLTPQEARLWVQLRQLKSRGYHFRRQAPIGRYIVDFVCFGAKIVIEADGGQHGMPDGIAADQQRDAFLR
GEGFRVLRFWNSDIDRHFDGVMQTVLDALPPPPVRPD

Sequences:

>Translated_117_residues
MPIATARTLRKRLTPQEARLWVQLRQLKSRGYHFRRQAPIGRYIVDFVCFGAKIVIEADGGQHGMPDGIAADQQRDAFLR
GEGFRVLRFWNSDIDRHFDGVMQTVLDALPPPPVRPD
>Mature_116_residues
PIATARTLRKRLTPQEARLWVQLRQLKSRGYHFRRQAPIGRYIVDFVCFGAKIVIEADGGQHGMPDGIAADQQRDAFLRG
EGFRVLRFWNSDIDRHFDGVMQTVLDALPPPPVRPD

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=113, Percent_Identity=43.3628318584071, Blast_Score=104, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 13398; Mature: 13266

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIATARTLRKRLTPQEARLWVQLRQLKSRGYHFRRQAPIGRYIVDFVCFGAKIVIEADG
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEECCC
GQHGMPDGIAADQQRDAFLRGEGFRVLRFWNSDIDRHFDGVMQTVLDALPPPPVRPD
CCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PIATARTLRKRLTPQEARLWVQLRQLKSRGYHFRRQAPIGRYIVDFVCFGAKIVIEADG
CCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEECCC
GQHGMPDGIAADQQRDAFLRGEGFRVLRFWNSDIDRHFDGVMQTVLDALPPPPVRPD
CCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]