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The map label for this gene is cbbS [H]

Identifier: 86751071

GI number: 86751071

Start: 4524622

End: 4525044

Strand: Reverse

Name: cbbS [H]

Synonym: RPB_3963

Alternate gene names: 86751071

Gene position: 4525044-4524622 (Counterclockwise)

Preceding gene: 86751072

Following gene: 86751070

Centisome position: 84.87

GC content: 63.36

Gene sequence:

>423_bases
ATGCGAATGACCCAAGGCTGTTTCTCTTACCTGCCGGACCTCACCGACGAGCAGATCTCGGCGCAAGTGCAATACGCGCT
CGGCAAGGGCTGGGCGGTGAACCTCGAATTCACCGACGATCCGCATCCCCGCAACACCTATTGGGACATGTGGGGCCTGC
CGATGTTCGATCTGCAGGACGCCGCCGGCGTGATGCTGGAACTGGCCGAATGCCGCAAGGTCTACGGCGACCGCTACATC
CGGATGTCGGCGTTCGACTCGTCTCATGGCTGGGAATCGGTGCGGCTGTCCTTCATCGTCAACCGGCCGAAGGACGAGCC
GGGCTTCCGGCTGGATCGCCAGGAAGTCGACGGCCGCAACATGCGCTACACCACCAGGTCCTATGCGGCTGACAAGCCCG
AGGGCAGCCGCTACGGAGGGTGA

Upstream 100 bases:

>100_bases
TGCGCTCGACACCTGGAAGAACGTGTCCTTCAATTACGAATCCACCGACACCCCCGACTACGCGCCGACCCCCAGCGTCT
CGGTCTAAGGAGCAGAACAC

Downstream 100 bases:

>100_bases
TCTTGGACACGACCTCCGCCGACAATGAAGCCGCGTCGCAGGCCCCGATCGATCTTCGCAAGGAGTTCGAGGAGGTCGGC
ATCGGCGAGGTGCTCGATCA

Product: ribulose-bisphosphate carboxylase form I small subunit CbbS

Products: NA

Alternate protein names: RuBisCO small subunit [H]

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MRMTQGCFSYLPDLTDEQISAQVQYALGKGWAVNLEFTDDPHPRNTYWDMWGLPMFDLQDAAGVMLELAECRKVYGDRYI
RMSAFDSSHGWESVRLSFIVNRPKDEPGFRLDRQEVDGRNMRYTTRSYAADKPEGSRYGG

Sequences:

>Translated_140_residues
MRMTQGCFSYLPDLTDEQISAQVQYALGKGWAVNLEFTDDPHPRNTYWDMWGLPMFDLQDAAGVMLELAECRKVYGDRYI
RMSAFDSSHGWESVRLSFIVNRPKDEPGFRLDRQEVDGRNMRYTTRSYAADKPEGSRYGG
>Mature_140_residues
MRMTQGCFSYLPDLTDEQISAQVQYALGKGWAVNLEFTDDPHPRNTYWDMWGLPMFDLQDAAGVMLELAECRKVYGDRYI
RMSAFDSSHGWESVRLSFIVNRPKDEPGFRLDRQEVDGRNMRYTTRSYAADKPEGSRYGG

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG4451

COG function: function code C; Ribulose bisphosphate carboxylase small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO small chain family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000894 [H]

Pfam domain/function: PF00101 RuBisCO_small [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 16207; Mature: 16207

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00283 SOYBEAN_KUNITZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMTQGCFSYLPDLTDEQISAQVQYALGKGWAVNLEFTDDPHPRNTYWDMWGLPMFDLQD
CCCCCHHHHHCCCCCCCHHHHHHEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCH
AAGVMLELAECRKVYGDRYIRMSAFDSSHGWESVRLSFIVNRPKDEPGFRLDRQEVDGRN
HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCEECHHHCCCCC
MRYTTRSYAADKPEGSRYGG
EEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRMTQGCFSYLPDLTDEQISAQVQYALGKGWAVNLEFTDDPHPRNTYWDMWGLPMFDLQD
CCCCCHHHHHCCCCCCCHHHHHHEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCH
AAGVMLELAECRKVYGDRYIRMSAFDSSHGWESVRLSFIVNRPKDEPGFRLDRQEVDGRN
HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCEECHHHCCCCC
MRYTTRSYAADKPEGSRYGG
EEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]