Click here to switch to the map view.

The map label for this gene is fdxD [H]

Identifier: 86750555

GI number: 86750555

Start: 3950595

End: 3951500

Strand: Direct

Name: fdxD [H]

Synonym: RPB_3444

Alternate gene names: 86750555

Gene position: 3950595-3951500 (Clockwise)

Preceding gene: 86750550

Following gene: 86750556

Centisome position: 74.1

GC content: 64.68

Gene sequence:

>906_bases
TTGGCTAACATTACTTTCTCTTCGCCCGTGATGGCGAAGGATGTCACCGTCTACGCCGTCGCCGGCGATCGCGGCACCAT
TCTGGCCGTCGCCAAGGCACACAAGATTCCGATCCCGTTCGACTGCCAGGACGGCGAATGCGGTTCCTGCCTGGTGCAGG
TCGAGCACTTCAATCCGAAGGCCAAGTCAGCAGTCGCGCTGACCGAGAAGGAAAAGGAAGTCCTGCGCCAGCTCGGCAAG
ATCACCAAGGACGAAATCGCCAACGCCGAAGTCAACGACGTTCCGCCGCGCTATCGCCTCGCCTGCCAGTGCTTCGTGCG
CAACGAGGACATCATGGTGCGGTTCGAGGGCGACAAGACCCTGCCGCAGAAGCTCGCGGTGACTCACGCCGCCGCGCGCT
TCAAGGGTGGCCTCGAGATTTCGACGCTGCCGGAGTTCTTCAGCTACGCCGCCAAGCTCGAGGAAGACGCCGCCCTGCAC
TACGACGAACTCGCCAAGGCGATGGCCGAGGCCGGTAACGAGTCGGTCGCGAAGCTGTTCGCGCAGCTCGCCGAATTCTC
GCGCATGCACCTCGCCGAGGTGAAGGCGCGCGCCGGCAGCATCGATGTCAGCAAGTCGGTGCCGCCGGACTACGCCTGGC
CCGATCACGCCACGCCGGAACGCGCGGCGGTGTGGGCTTCCGACACCTCGATGACGCGGCTCGGCGGCCTCAAGGCGGCG
CTGCAGGGCGAACGTCGCGGCTACGAATTCTACCGTGCGATCGAAGCGACCACCAAGTCGCCCGAGGTCGCGGCCGCGGC
GAAGGAATTCGTCGGTGAGGAAGCCGAGCACGTCCGCATCCTCGAAGCCTGGATCACCCAGGAAGAATGGGCGCTCAAGC
ACGCCAAGACGGCTGAAAACGCCTGA

Upstream 100 bases:

>100_bases
AATATCGACTGATCTTCAGTGGCCTGGTTTTTGCCAAGGCGGCATCAAGGACGCGCGTGAGGCACGGCGTCGGTCCCGAA
CCAGCTAACAGGAGAGCGCC

Downstream 100 bases:

>100_bases
CGACGACATCCGACATCGGAGACGGCTGCCGTCGACCCGGCGGCAGCCGAACAGCGAAGGATATTCAGATGGAAACGGTC
GAAGAGTTTCTGGCGCACTC

Product: ferredoxin

Products: NA

Alternate protein names: Ferredoxin V; FdV; Ferredoxin, plant-type [H]

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MANITFSSPVMAKDVTVYAVAGDRGTILAVAKAHKIPIPFDCQDGECGSCLVQVEHFNPKAKSAVALTEKEKEVLRQLGK
ITKDEIANAEVNDVPPRYRLACQCFVRNEDIMVRFEGDKTLPQKLAVTHAAARFKGGLEISTLPEFFSYAAKLEEDAALH
YDELAKAMAEAGNESVAKLFAQLAEFSRMHLAEVKARAGSIDVSKSVPPDYAWPDHATPERAAVWASDTSMTRLGGLKAA
LQGERRGYEFYRAIEATTKSPEVAAAAKEFVGEEAEHVRILEAWITQEEWALKHAKTAENA

Sequences:

>Translated_301_residues
MANITFSSPVMAKDVTVYAVAGDRGTILAVAKAHKIPIPFDCQDGECGSCLVQVEHFNPKAKSAVALTEKEKEVLRQLGK
ITKDEIANAEVNDVPPRYRLACQCFVRNEDIMVRFEGDKTLPQKLAVTHAAARFKGGLEISTLPEFFSYAAKLEEDAALH
YDELAKAMAEAGNESVAKLFAQLAEFSRMHLAEVKARAGSIDVSKSVPPDYAWPDHATPERAAVWASDTSMTRLGGLKAA
LQGERRGYEFYRAIEATTKSPEVAAAAKEFVGEEAEHVRILEAWITQEEWALKHAKTAENA
>Mature_300_residues
ANITFSSPVMAKDVTVYAVAGDRGTILAVAKAHKIPIPFDCQDGECGSCLVQVEHFNPKAKSAVALTEKEKEVLRQLGKI
TKDEIANAEVNDVPPRYRLACQCFVRNEDIMVRFEGDKTLPQKLAVTHAAARFKGGLEISTLPEFFSYAAKLEEDAALHY
DELAKAMAEAGNESVAKLFAQLAEFSRMHLAEVKARAGSIDVSKSVPPDYAWPDHATPERAAVWASDTSMTRLGGLKAAL
QGERRGYEFYRAIEATTKSPEVAAAAKEFVGEEAEHVRILEAWITQEEWALKHAKTAENA

Specific function: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. This ferredoxin probably participates in nitrogen fixation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041 [H]

Pfam domain/function: PF00111 Fer2 [H]

EC number: NA

Molecular weight: Translated: 32995; Mature: 32863

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANITFSSPVMAKDVTVYAVAGDRGTILAVAKAHKIPIPFDCQDGECGSCLVQVEHFNPK
CCCCCCCCCCEECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC
AKSAVALTEKEKEVLRQLGKITKDEIANAEVNDVPPRYRLACQCFVRNEDIMVRFEGDKT
HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHEEEEEEEECCCEEEEECCCCC
LPQKLAVTHAAARFKGGLEISTLPEFFSYAAKLEEDAALHYDELAKAMAEAGNESVAKLF
CHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
AQLAEFSRMHLAEVKARAGSIDVSKSVPPDYAWPDHATPERAAVWASDTSMTRLGGLKAA
HHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
LQGERRGYEFYRAIEATTKSPEVAAAAKEFVGEEAEHVRILEAWITQEEWALKHAKTAEN
HHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHCCC
A
C
>Mature Secondary Structure 
ANITFSSPVMAKDVTVYAVAGDRGTILAVAKAHKIPIPFDCQDGECGSCLVQVEHFNPK
CCCCCCCCCEECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC
AKSAVALTEKEKEVLRQLGKITKDEIANAEVNDVPPRYRLACQCFVRNEDIMVRFEGDKT
HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHEEEEEEEECCCEEEEECCCCC
LPQKLAVTHAAARFKGGLEISTLPEFFSYAAKLEEDAALHYDELAKAMAEAGNESVAKLF
CHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
AQLAEFSRMHLAEVKARAGSIDVSKSVPPDYAWPDHATPERAAVWASDTSMTRLGGLKAA
HHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
LQGERRGYEFYRAIEATTKSPEVAAAAKEFVGEEAEHVRILEAWITQEEWALKHAKTAEN
HHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7693551 [H]