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The map label for this gene is agaB [H]

Identifier: 86750146

GI number: 86750146

Start: 3452086

End: 3453441

Strand: Direct

Name: agaB [H]

Synonym: RPB_3029

Alternate gene names: 86750146

Gene position: 3452086-3453441 (Clockwise)

Preceding gene: 86750145

Following gene: 86750148

Centisome position: 64.75

GC content: 68.51

Gene sequence:

>1356_bases
ATGACCGACATTCCGAGAACCCGCTGGGGCGGCCTCGCCGAAGACAAGGCTGCGGCCACCGGCTTTTTCCGCGTCGCGCA
GATCGACGGCGTGTGGTGGTTCATCGATCCGGACGGCGGCCGCTTCCTGTCGAAGGGCGTCACCGCGGTGAATTTCGACC
ACGACAGTATCAAAGGCACCGAGCGTCACCCCTATCGCGAGGCGAGCCTGCACAAATACGGCAGCCGCAACGCCTGGCGC
AGCGCCGTCGCCGATCGCCTGCACCGCTGGGGCTTCAACACGATCGGGGCGTGGTCGGAGCCGGAGGTGGCATCGGCCGG
CTGCGCCCCGCTGGCCTCGGCCGCCGGCGTGGTCTATCTCGCCACCGCCTACAGTGACGGCCGCGGCTGGCCGCAATCCG
ATCCGTTCGCTCCGGCCTTCGAGACCTTCGCGCAGCAACGCGCCCGCGAGATCTGCGCGCCGCGGCGTGACGATCCGAGC
GTGCTCGGCTGGTTCATCGACAACGAGTTGCAATGGGGCCCGGACTGGCGCGGCGAGAACGAACTGCTGCCGGTGATCCT
GCGCGACAACGCGGCGCCGCATTCACGCCAGGTAGCGGTCGACCTGCTGCGCCGCCGCTACGCCAGCGTCGCAGAGTTCA
ACACAGCGTGGCGATGCTCTGCATCATCGTGGGACGCGCTGGCGACCGTGCCGATCGCGGCCCCGCCCTTCACCCGCAAT
TTCTTCACACATGATCACGCGCAGGAACGCGATCCGTTGCGCGGGCGTTACTTCGCCGATTGCGATGCCTTCGCCGGGCT
GCTCGCCGAGCGCTACATGGCGGTGAGCGCCGCGGCGATCCGCGCGGCCGCGCCGCATCATCTCGTGCTCGGCAGCCGCT
TCGCCTACGCGCCGCAGCCGCAGGTCATCGCTGCCGCCGGCCGGCATTGCGACGTCATCAGCATCAATTGCTACGACGCT
TTGCCCGACGCAGTGATCGACGCCTATGCCGAATGCGGCCGGCCCTGCCTGATCGGCGAGTTCTCGTTCCGCGGCGACGA
CGCCGGGTTGCCGAACACGCAAGGCGCCGGGCCGCGCGTCGAGACGCAGGCGGATCGCGCCGCAGGCTTTGCGCGCTATG
TCGGTGCCGGCCTGCGCCACCCGAACCTGATCGGCTATCACTGGTTCCTGCACGCCGATCAGCCGGCGGAAGGCCGCTGG
GACGGCGAGAATTCCAACTACGGCGTCGTCACCATCGACGATGAGGTTTATGTCGAACTGACCGAGGCGATGACGGTGGT
CAATGACGACGCCGAATGGCTGCACGCCGGCGCAGCGCAGGTCCGGCGACACATCGCAACGCCGTCGGCGGCCTGA

Upstream 100 bases:

>100_bases
CCAGCGCGGATTGACCGGCGTCAACGTCGTCGCGCGCCGAACCGGCGAGGTTGGCCCCCCGCAATCAGAGGGCCGCCGAC
GCGCGGCGCAACGGCGTTCG

Downstream 100 bases:

>100_bases
TCAGGCCGCCCGCGCCGCCCGGCGCAACGCCTGCGGCGGCTGGCCGAAGGCGCGAAGGAAGGCGCGGCGCATCCGCTCCG
GATCGCCGAAGCCGGTCGTC

Product: agarase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MTDIPRTRWGGLAEDKAAATGFFRVAQIDGVWWFIDPDGGRFLSKGVTAVNFDHDSIKGTERHPYREASLHKYGSRNAWR
SAVADRLHRWGFNTIGAWSEPEVASAGCAPLASAAGVVYLATAYSDGRGWPQSDPFAPAFETFAQQRAREICAPRRDDPS
VLGWFIDNELQWGPDWRGENELLPVILRDNAAPHSRQVAVDLLRRRYASVAEFNTAWRCSASSWDALATVPIAAPPFTRN
FFTHDHAQERDPLRGRYFADCDAFAGLLAERYMAVSAAAIRAAAPHHLVLGSRFAYAPQPQVIAAAGRHCDVISINCYDA
LPDAVIDAYAECGRPCLIGEFSFRGDDAGLPNTQGAGPRVETQADRAAGFARYVGAGLRHPNLIGYHWFLHADQPAEGRW
DGENSNYGVVTIDDEVYVELTEAMTVVNDDAEWLHAGAAQVRRHIATPSAA

Sequences:

>Translated_451_residues
MTDIPRTRWGGLAEDKAAATGFFRVAQIDGVWWFIDPDGGRFLSKGVTAVNFDHDSIKGTERHPYREASLHKYGSRNAWR
SAVADRLHRWGFNTIGAWSEPEVASAGCAPLASAAGVVYLATAYSDGRGWPQSDPFAPAFETFAQQRAREICAPRRDDPS
VLGWFIDNELQWGPDWRGENELLPVILRDNAAPHSRQVAVDLLRRRYASVAEFNTAWRCSASSWDALATVPIAAPPFTRN
FFTHDHAQERDPLRGRYFADCDAFAGLLAERYMAVSAAAIRAAAPHHLVLGSRFAYAPQPQVIAAAGRHCDVISINCYDA
LPDAVIDAYAECGRPCLIGEFSFRGDDAGLPNTQGAGPRVETQADRAAGFARYVGAGLRHPNLIGYHWFLHADQPAEGRW
DGENSNYGVVTIDDEVYVELTEAMTVVNDDAEWLHAGAAQVRRHIATPSAA
>Mature_450_residues
TDIPRTRWGGLAEDKAAATGFFRVAQIDGVWWFIDPDGGRFLSKGVTAVNFDHDSIKGTERHPYREASLHKYGSRNAWRS
AVADRLHRWGFNTIGAWSEPEVASAGCAPLASAAGVVYLATAYSDGRGWPQSDPFAPAFETFAQQRAREICAPRRDDPSV
LGWFIDNELQWGPDWRGENELLPVILRDNAAPHSRQVAVDLLRRRYASVAEFNTAWRCSASSWDALATVPIAAPPFTRNF
FTHDHAQERDPLRGRYFADCDAFAGLLAERYMAVSAAAIRAAAPHHLVLGSRFAYAPQPQVIAAAGRHCDVISINCYDAL
PDAVIDAYAECGRPCLIGEFSFRGDDAGLPNTQGAGPRVETQADRAAGFARYVGAGLRHPNLIGYHWFLHADQPAEGRWD
GENSNYGVVTIDDEVYVELTEAMTVVNDDAEWLHAGAAQVRRHIATPSAA

Specific function: Hydrolyzes agarose to yield predominantly neoagarotetraose and neoagarohexaose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 50 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013529
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02449 Glyco_hydro_42 [H]

EC number: =3.2.1.81 [H]

Molecular weight: Translated: 49551; Mature: 49420

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIPRTRWGGLAEDKAAATGFFRVAQIDGVWWFIDPDGGRFLSKGVTAVNFDHDSIKGT
CCCCCCCCCCCCCCHHHHHHHEEEEEEECCEEEEECCCCCHHHHCCCEEEECCCCCCCCC
ERHPYREASLHKYGSRNAWRSAVADRLHRWGFNTIGAWSEPEVASAGCAPLASAAGVVYL
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
ATAYSDGRGWPQSDPFAPAFETFAQQRAREICAPRRDDPSVLGWFIDNELQWGPDWRGEN
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCC
ELLPVILRDNAAPHSRQVAVDLLRRRYASVAEFNTAWRCSASSWDALATVPIAAPPFTRN
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCCCCCCC
FFTHDHAQERDPLRGRYFADCDAFAGLLAERYMAVSAAAIRAAAPHHLVLGSRFAYAPQP
CCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
QVIAAAGRHCDVISINCYDALPDAVIDAYAECGRPCLIGEFSFRGDDAGLPNTQGAGPRV
CEEEECCCCCCEEEEECHHHCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
ETQADRAAGFARYVGAGLRHPNLIGYHWFLHADQPAEGRWDGENSNYGVVTIDDEVYVEL
CCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEE
TEAMTVVNDDAEWLHAGAAQVRRHIATPSAA
EHHHHEECCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TDIPRTRWGGLAEDKAAATGFFRVAQIDGVWWFIDPDGGRFLSKGVTAVNFDHDSIKGT
CCCCCCCCCCCCCHHHHHHHEEEEEEECCEEEEECCCCCHHHHCCCEEEECCCCCCCCC
ERHPYREASLHKYGSRNAWRSAVADRLHRWGFNTIGAWSEPEVASAGCAPLASAAGVVYL
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEE
ATAYSDGRGWPQSDPFAPAFETFAQQRAREICAPRRDDPSVLGWFIDNELQWGPDWRGEN
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCC
ELLPVILRDNAAPHSRQVAVDLLRRRYASVAEFNTAWRCSASSWDALATVPIAAPPFTRN
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCCCCCCC
FFTHDHAQERDPLRGRYFADCDAFAGLLAERYMAVSAAAIRAAAPHHLVLGSRFAYAPQP
CCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
QVIAAAGRHCDVISINCYDALPDAVIDAYAECGRPCLIGEFSFRGDDAGLPNTQGAGPRV
CEEEECCCCCCEEEEECHHHCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
ETQADRAAGFARYVGAGLRHPNLIGYHWFLHADQPAEGRWDGENSNYGVVTIDDEVYVEL
CCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEE
TEAMTVVNDDAEWLHAGAAQVRRHIATPSAA
EHHHHEECCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8193156 [H]