| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is lvr [H]
Identifier: 86750144
GI number: 86750144
Start: 3450231
End: 3451010
Strand: Direct
Name: lvr [H]
Synonym: RPB_3027
Alternate gene names: 86750144
Gene position: 3450231-3451010 (Clockwise)
Preceding gene: 86750142
Following gene: 86750145
Centisome position: 64.71
GC content: 68.72
Gene sequence:
>780_bases ATGACCGACCGAATTCGGCTGGACGGCAGGGTGGCGCTGGTCACCGGCGCCGCGGGAGTGATCGGCCGCGCGACCATCGA CCTGCTCGCAGAACGTGGTGCCCGGATCGTCGCCATCGACCGCGATCGGACGGCGCTCGATCAGGCGGTCGCCGCCCTGC CCGCCTCGGCGCAACCGCTGGCGCTCACCGCCGACGTCACCCAGGAAGATCAAGTCGCGGCCTATGTGCGCGCCGCGCTC GAGCGCTGCGGGCGGATCGACGTGTTCTACAACAATGCCGGTATCGAGGGTGATATCGCGCCGATCGTGCGCACCTCGCT CGACGCCTTCCGCCGCGTGCTCGACGTCAACGTCGTCGGCGTGTTTCTCGGCATGAAGCACGTGCTGCCGGCGATGCTGC AGCTGGGCTCCGGCAGCATCATCAACACCGCCTCGATCGCCGGATTGATCGGCTCCAACGACATCATCGCCTACACCGCC AGCAAACACGCCGTGATCGGCATGACGAAAACGGCGGCGCTGGAATGCGGCGACAGCGGCGTGCGCGTCAATTGCGTCTG CCCCGGACTGATCGACAGCCGGATGCTCAGCGCGATCGTCGAAGGCCGCAATCCCGGCCCGACGCCGGTGCCCAACGACA AGATCGTCGACCGGATTCCGGCGCGGCGGCTCGGTCATGCCGCGGAGGTCGCCTCGGTGGTGGCGTTTCTCGCCTCCGAC GAGGCGAGCTACGTGTCGGGCGCGGCCTACACCGTCGACGGCGGCCGCACCGCGAGCTGA
Upstream 100 bases:
>100_bases CCGCCGCAGCTGAAATAATCGTCGCAGGCGCAAGCGCGGGATCAACCCGACGCCGCCACCATTCCGGATCGAACCGGAAG GAACCGGGGAGACGACGGGC
Downstream 100 bases:
>100_bases TCGTTCTCTCTCACCAGGTCCAGCAAAACCATGCCAGCAAAACTCGATCCCGATGCCGCCGCCGTCTACAAGGCGTTCCA GGACGCGGGCCGCCCCGCCT
Product: Short-chain dehydrogenase/reductase
Products: NA
Alternate protein names: (6R)-2,2,6-trimethyl-1,4-cyclohexanedione reductase [H]
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MTDRIRLDGRVALVTGAAGVIGRATIDLLAERGARIVAIDRDRTALDQAVAALPASAQPLALTADVTQEDQVAAYVRAAL ERCGRIDVFYNNAGIEGDIAPIVRTSLDAFRRVLDVNVVGVFLGMKHVLPAMLQLGSGSIINTASIAGLIGSNDIIAYTA SKHAVIGMTKTAALECGDSGVRVNCVCPGLIDSRMLSAIVEGRNPGPTPVPNDKIVDRIPARRLGHAAEVASVVAFLASD EASYVSGAAYTVDGGRTAS
Sequences:
>Translated_259_residues MTDRIRLDGRVALVTGAAGVIGRATIDLLAERGARIVAIDRDRTALDQAVAALPASAQPLALTADVTQEDQVAAYVRAAL ERCGRIDVFYNNAGIEGDIAPIVRTSLDAFRRVLDVNVVGVFLGMKHVLPAMLQLGSGSIINTASIAGLIGSNDIIAYTA SKHAVIGMTKTAALECGDSGVRVNCVCPGLIDSRMLSAIVEGRNPGPTPVPNDKIVDRIPARRLGHAAEVASVVAFLASD EASYVSGAAYTVDGGRTAS >Mature_258_residues TDRIRLDGRVALVTGAAGVIGRATIDLLAERGARIVAIDRDRTALDQAVAALPASAQPLALTADVTQEDQVAAYVRAALE RCGRIDVFYNNAGIEGDIAPIVRTSLDAFRRVLDVNVVGVFLGMKHVLPAMLQLGSGSIINTASIAGLIGSNDIIAYTAS KHAVIGMTKTAALECGDSGVRVNCVCPGLIDSRMLSAIVEGRNPGPTPVPNDKIVDRIPARRLGHAAEVASVVAFLASDE ASYVSGAAYTVDGGRTAS
Specific function: Catalyzes the regio- and stereoselective reversible NAD- dependent reduction of (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) to (4R,6R)-4-hydroxy-2,2,6-trimethylcyclohexanone (actinol) [H]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=33.0739299610895, Blast_Score=128, Evalue=4e-30, Organism=Homo sapiens, GI32483357, Length=262, Percent_Identity=35.1145038167939, Blast_Score=127, Evalue=1e-29, Organism=Homo sapiens, GI15277342, Length=264, Percent_Identity=37.8787878787879, Blast_Score=121, Evalue=7e-28, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=34.5098039215686, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=36.283185840708, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI31542939, Length=223, Percent_Identity=34.0807174887892, Blast_Score=118, Evalue=7e-27, Organism=Homo sapiens, GI126723750, Length=264, Percent_Identity=32.9545454545455, Blast_Score=114, Evalue=9e-26, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=32.1138211382114, Blast_Score=111, Evalue=5e-25, Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=33.3333333333333, Blast_Score=107, Evalue=7e-24, Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=29.6442687747036, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=34.5549738219895, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=33.7142857142857, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=31.2252964426877, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI4758504, Length=260, Percent_Identity=32.3076923076923, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI142976729, Length=250, Percent_Identity=27.2, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI4503301, Length=254, Percent_Identity=27.5590551181102, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI126723191, Length=206, Percent_Identity=33.495145631068, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI210032110, Length=193, Percent_Identity=26.9430051813472, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI4504505, Length=209, Percent_Identity=31.1004784688995, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI7706318, Length=199, Percent_Identity=30.1507537688442, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI83715985, Length=261, Percent_Identity=31.0344827586207, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI40807363, Length=247, Percent_Identity=25.5060728744939, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI223718074, Length=155, Percent_Identity=34.8387096774194, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI25282469, Length=241, Percent_Identity=24.896265560166, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI166795268, Length=210, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI7657478, Length=211, Percent_Identity=29.8578199052133, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=34.7826086956522, Blast_Score=136, Evalue=1e-33, Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=33.8645418326693, Blast_Score=134, Evalue=6e-33, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=35.3174603174603, Blast_Score=120, Evalue=8e-29, Organism=Escherichia coli, GI1787905, Length=255, Percent_Identity=32.156862745098, Blast_Score=117, Evalue=9e-28, Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1790717, Length=256, Percent_Identity=30.859375, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=29.0196078431373, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1789208, Length=262, Percent_Identity=33.206106870229, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=30.5882352941176, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI1789378, Length=255, Percent_Identity=30.5882352941176, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=28.740157480315, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1787526, Length=255, Percent_Identity=27.4509803921569, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI2367365, Length=256, Percent_Identity=28.515625, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1788891, Length=133, Percent_Identity=36.8421052631579, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1786701, Length=122, Percent_Identity=31.1475409836066, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=35.1778656126482, Blast_Score=127, Evalue=4e-30, Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=36.8627450980392, Blast_Score=123, Evalue=9e-29, Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=30.8300395256917, Blast_Score=120, Evalue=6e-28, Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=29.0196078431373, Blast_Score=113, Evalue=8e-26, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=31.8897637795276, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=31.7460317460317, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=30.8823529411765, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=29.8449612403101, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI193204405, Length=270, Percent_Identity=30, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=30.8270676691729, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=30.5970149253731, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=29.0566037735849, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=29.9242424242424, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=28.7878787878788, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17562904, Length=270, Percent_Identity=27.7777777777778, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=28.1954887218045, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=29.5454545454545, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17508895, Length=217, Percent_Identity=29.0322580645161, Blast_Score=88, Evalue=6e-18, Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=29.4339622641509, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=28.7878787878788, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI115534694, Length=254, Percent_Identity=31.8897637795276, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17564282, Length=211, Percent_Identity=27.4881516587678, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17563726, Length=271, Percent_Identity=28.4132841328413, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17568967, Length=215, Percent_Identity=31.6279069767442, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=26.6917293233083, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI193203117, Length=247, Percent_Identity=26.7206477732794, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=26.2962962962963, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=28.0898876404494, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562990, Length=267, Percent_Identity=28.0898876404494, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193203115, Length=243, Percent_Identity=27.1604938271605, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=29.9242424242424, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17508651, Length=245, Percent_Identity=26.9387755102041, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17561272, Length=266, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=27.906976744186, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=27.2373540856031, Blast_Score=67, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=255, Percent_Identity=30.5882352941176, Blast_Score=99, Evalue=7e-22, Organism=Saccharomyces cerevisiae, GI6322861, Length=209, Percent_Identity=29.6650717703349, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=200, Percent_Identity=26, Blast_Score=63, Evalue=4e-11, Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=38.4920634920635, Blast_Score=141, Evalue=4e-34, Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=32.2834645669291, Blast_Score=132, Evalue=2e-31, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=36.4705882352941, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI23397609, Length=256, Percent_Identity=35.9375, Blast_Score=127, Evalue=7e-30, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=36.6533864541833, Blast_Score=124, Evalue=4e-29, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=32.03125, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=32.8063241106719, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=32.5581395348837, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI18859837, Length=262, Percent_Identity=30.9160305343511, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI21358495, Length=199, Percent_Identity=28.643216080402, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI221510726, Length=248, Percent_Identity=27.0161290322581, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI281364892, Length=164, Percent_Identity=33.5365853658537, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI281364494, Length=205, Percent_Identity=28.2926829268293, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24640492, Length=192, Percent_Identity=25.5208333333333, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24581726, Length=218, Percent_Identity=25.2293577981651, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007236, Length=210, Percent_Identity=30, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24584748, Length=223, Percent_Identity=26.457399103139, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24663911, Length=208, Percent_Identity=27.8846153846154, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=26.7015706806283, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21356301, Length=189, Percent_Identity=30.1587301587302, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI45554248, Length=210, Percent_Identity=29.0476190476191, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24640117, Length=210, Percent_Identity=29.0476190476191, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24665247, Length=263, Percent_Identity=28.5171102661597, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26860; Mature: 26729
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDRIRLDGRVALVTGAAGVIGRATIDLLAERGARIVAIDRDRTALDQAVAALPASAQPL CCCCEEECCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCE ALTADVTQEDQVAAYVRAALERCGRIDVFYNNAGIEGDIAPIVRTSLDAFRRVLDVNVVG EEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VFLGMKHVLPAMLQLGSGSIINTASIAGLIGSNDIIAYTASKHAVIGMTKTAALECGDSG HHHHHHHHHHHHHHCCCCCEEEHHHHHHEECCCCEEEEECCCCEEEEECHHHEEEECCCC VRVNCVCPGLIDSRMLSAIVEGRNPGPTPVPNDKIVDRIPARRLGHAAEVASVVAFLASD CEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHHHCHHHHHHHHHHHHHCC EASYVSGAAYTVDGGRTAS CCCHHCCCEEEECCCCCCC >Mature Secondary Structure TDRIRLDGRVALVTGAAGVIGRATIDLLAERGARIVAIDRDRTALDQAVAALPASAQPL CCCEEECCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCE ALTADVTQEDQVAAYVRAALERCGRIDVFYNNAGIEGDIAPIVRTSLDAFRRVLDVNVVG EEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VFLGMKHVLPAMLQLGSGSIINTASIAGLIGSNDIIAYTASKHAVIGMTKTAALECGDSG HHHHHHHHHHHHHHCCCCCEEEHHHHHHEECCCCEEEEECCCCEEEEECHHHEEEECCCC VRVNCVCPGLIDSRMLSAIVEGRNPGPTPVPNDKIVDRIPARRLGHAAEVASVVAFLASD CEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHHHCHHHHHHHHHHHHHCC EASYVSGAAYTVDGGRTAS CCCHHCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11388460; 10508066 [H]