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The map label for this gene is ygaD [C]

Identifier: 86750003

GI number: 86750003

Start: 3286695

End: 3287330

Strand: Direct

Name: ygaD [C]

Synonym: RPB_2886

Alternate gene names: 86750003

Gene position: 3286695-3287330 (Clockwise)

Preceding gene: 86750002

Following gene: 86750006

Centisome position: 61.64

GC content: 70.28

Gene sequence:

>636_bases
ATGAGCGGCAACGACGCCCGCACCGATTCCCGTGCCTTGGCCCGCTCGTTGCTCGACCTCTGCCGCTCGCGCAAGCTCAC
CATCGCCACGGCTGAATCCTGCACCGGCGGCTTGGTCGCCGGCGCCCTCACCGACATCCCCGGCTCGTCCGACGTGATCG
ACCGCGGCTTCGTCACCTATTCGAACGAAGCCAAGCACGACATGCTCGGCGTCGAGACCGCGACGCTCACCACCTTCGGC
GCCGTCAGCAAGGAGACTGCGCTGGCGATGGCGGTCGGCGCGCTGGAGCATGCCGACGTCGATCTGGCGGTGTCGATCAC
CGGCATCGCCGGCCCCGGCGGCGCGACCCCGGGCAAGCCGGTCGGGCTTGTGCATTTTGCGGTGGCGGCGCGCGACGGCC
GCATCACCCATCGCGAGCAGCGCTTCGGCGCGATCGGCCGCAGCAATGTGCGTCAGCGTTCCGTCGTCGAAGCATTGCGG
ATGCTGCTGGAGGTCGCACGCGGCCCAAAGCCGGCGGTGAAGGCGAAGCGCACAGCCGCCACCGGCCTGCACAAACGCGT
CGCCCGCTCGCCGAGGCGCACCGCCGCCAGCAAGCGCGTGCCGCCGAAGCGGCCGGTCAAGCCGAAGAAGACTTAG

Upstream 100 bases:

>100_bases
TCGGCTTCACCGGCCGCGAGGAAGGCATCGCCGCCACCGCGTCGGCCACCATCCGGCTGCCTTGGTCCCCTTGGGGCGCC
GAAGGACAGGCCTCCTGACG

Downstream 100 bases:

>100_bases
CGACGACGTCACGCGTCGCGGCGACGTGCGATCTTGCGGCGACAGGAGGTGCACGGCATGGCCCCGCCATCGCCGTCACC
CTCCGCGAAAGCGGAGGGCC

Product: CinA-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSGNDARTDSRALARSLLDLCRSRKLTIATAESCTGGLVAGALTDIPGSSDVIDRGFVTYSNEAKHDMLGVETATLTTFG
AVSKETALAMAVGALEHADVDLAVSITGIAGPGGATPGKPVGLVHFAVAARDGRITHREQRFGAIGRSNVRQRSVVEALR
MLLEVARGPKPAVKAKRTAATGLHKRVARSPRRTAASKRVPPKRPVKPKKT

Sequences:

>Translated_211_residues
MSGNDARTDSRALARSLLDLCRSRKLTIATAESCTGGLVAGALTDIPGSSDVIDRGFVTYSNEAKHDMLGVETATLTTFG
AVSKETALAMAVGALEHADVDLAVSITGIAGPGGATPGKPVGLVHFAVAARDGRITHREQRFGAIGRSNVRQRSVVEALR
MLLEVARGPKPAVKAKRTAATGLHKRVARSPRRTAASKRVPPKRPVKPKKT
>Mature_210_residues
SGNDARTDSRALARSLLDLCRSRKLTIATAESCTGGLVAGALTDIPGSSDVIDRGFVTYSNEAKHDMLGVETATLTTFGA
VSKETALAMAVGALEHADVDLAVSITGIAGPGGATPGKPVGLVHFAVAARDGRITHREQRFGAIGRSNVRQRSVVEALRM
LLEVARGPKPAVKAKRTAATGLHKRVARSPRRTAASKRVPPKRPVKPKKT

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=160, Percent_Identity=50, Blast_Score=131, Evalue=3e-32,
Organism=Escherichia coli, GI1787818, Length=118, Percent_Identity=40.6779661016949, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 22123; Mature: 21992

Theoretical pI: Translated: 11.52; Mature: 11.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGNDARTDSRALARSLLDLCRSRKLTIATAESCTGGLVAGALTDIPGSSDVIDRGFVTY
CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCCCCHHHCCCEEE
SNEAKHDMLGVETATLTTFGAVSKETALAMAVGALEHADVDLAVSITGIAGPGGATPGKP
CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCC
VGLVHFAVAARDGRITHREQRFGAIGRSNVRQRSVVEALRMLLEVARGPKPAVKAKRTAA
CHHEEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
TGLHKRVARSPRRTAASKRVPPKRPVKPKKT
HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SGNDARTDSRALARSLLDLCRSRKLTIATAESCTGGLVAGALTDIPGSSDVIDRGFVTY
CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCCCCHHHCCCEEE
SNEAKHDMLGVETATLTTFGAVSKETALAMAVGALEHADVDLAVSITGIAGPGGATPGKP
CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCC
VGLVHFAVAARDGRITHREQRFGAIGRSNVRQRSVVEALRMLLEVARGPKPAVKAKRTAA
CHHEEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
TGLHKRVARSPRRTAASKRVPPKRPVKPKKT
HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA