| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is pgaC [H]
Identifier: 86749977
GI number: 86749977
Start: 3260290
End: 3262989
Strand: Direct
Name: pgaC [H]
Synonym: RPB_2860
Alternate gene names: 86749977
Gene position: 3260290-3262989 (Clockwise)
Preceding gene: 86749976
Following gene: 86749978
Centisome position: 61.15
GC content: 64.96
Gene sequence:
>2700_bases ATGCGCGCCGTCGTCGCTGTTCTGCTGCTGGTCGTTGCCGCTCACGCTGGTCTCTGGGGGCTGCTCAGGGACAAACAGAA AGCTCCCGACTTCACCGGCATTCTGCCGAGCGTGTCTTACGCGCCGTTCGACGGCTCGGCGCATCCCGACGTCGACAACA TTCCGAGCGCCGAGCGCATCCGCAGCGACCTGAAGACGCTGTCGCCGATGACCCGGGCGATCCGTCTGTACTCGTCGACC GGCGGCGTCGAGCTGGTGCCGCCGATCGCCAACGAGGTCGGCCTGAAAGTCACGGTCGGCGCCTGGATCGACAAGTTCAG CGACCGCAACGAGCGCGAAATGCAGGCGGCGATCGAGCTCGCCAAGCGCAACAGCAACGTCAACGGCATCGTCGTCGGCA ACGAAACGATCTACCGCGCCGACCAGAAGGTCGAGGACCTGATCAAACTGATCCAGCGGGTGAAGAGCCAGGTCAACGTG CCGGTCACCACCGGCGAGATCTGGAACATCTGGATCGAGAATCCCGAACTGGCGTCCTCGGTCGACTTCATCGCCGCCCA CATCCTGCCCTATTGGGAAGGGTTCTCGGACAAGCAGGCGGTCGATCAGGCGCTGATCATCTACCAGAAACTGCGCGACG CCTTCCCCGGCAAGCGCATCGTGATCGCCGAATTCGGCTGGCCGAGCGCGGGCTACAATCTCAAATCGGCGATCCCCGGC CCGTTCGAGCAGGCGGTGACGCTGCGCAATTTCGTCAGCCGCGCCGAAGCCATCGGGATGGAATACAACATCGTCGAGGC GATCGATCAGCCGTGGAAGTTCTTCGAAGGCGGCGTCGGGCCGTATTGGGGCATCCTCAACGCGTCGCGTGAGCCGAAAT TCGCCTGGACCGGCCCGGTGGTCGACCCGGCCTATTGGAAGCTCGCCGGCATCGCGCTGCTGGTCGGCATTCTGCTGTCG CTGCCGATTCTGCAGCTCGCCGCCCCCACGGCGATGCAGACGCTGCTGTTGTCGTCGGCCGCGCACGGCGTCGGCGCCTG GGTCGCCACGGTGTTCGCCTATTGGACCGGGCACTACTTCCTGTTCGGCTCGGCCTTCGCGCTCACGCTCGGCATGATCC TGCTGGTGCCTTTGGTCGCGATCGCGCTGGCGCGGATCGAGGAAATCGCCGTCGTCGCGTTCGGCCGCAAGCCGCGGCGG CTGATCACCCGCGCGATGACAGACGTCCAGGAGAAGAAGCAGACCGCGGCGCTGGCCAAGGGCGAACCGGTGCGCTTCCC CAAAGTGTCGATCCACGTCCCGGCCTATTTCGAACCGCCGGAGATGCTCAAACAGACGCTCGATGCGGTGGCCAGGCTCG ACTATCCGAATTTCGAATGCGTGGTGATCATCAACAACACGCCGGACCCGGCCTTCACCCAGCCGATCCAGGACCATTGC CGCGAGCTCGGCGAGCGCTTCAAATTCATCAACGCCGAGAAAGTCCAGGGCTTCAAGGCCGGCGCCTTGCGGATCGCGAT GGACCGCACCGCCGCCGATGCCGAGATCATCGGCATCATCGACGCCGACTATGTGGTGACGCCGGACTGGCTGAAGGATC TGGTGCCGGCGTTCGACGATCCCCGGGTCGGCCTGGTCCAGGCCCCGCAGGAGCATCGCGACGGCGACCGCTCGCTGATG CACTACATCATGAACGGCGAATATGCCGGCTTCTTCGACATCGGCATGGTCCAGCGCAACGAGGTCAACGGCATCATCGT GCACGGCACGATGTGCCTGATCCGCCGCGCCGCGATGGACATGGCCGGCGGCTGGTCGAGCGACACGATCTGCGAGGATT CCGACCTCGGCCTCGAGATCATGGAGCATGGCTGGCTCACCCACTACACCAACACCCGCTACGGCTACGGCCTGCTGCCG GACACCTACGAGGCGTTCAAGAAGCAGCGCCACCGCTGGGCCTATGGCGGCTTCCAGATCATCAAGAAGCACTGGCGCCG CTTCCTGCCCGGCAACAGCCGCCTCTCCCGCGACCAGCGTCGCGAATTCGGTCTCGGCTGGCTGAACTGGCTCGGCGCCG AGAGCCTCGGCGTGGTGGTGGCGATCCTCAATCTGATCTGGGTGCCGATCGTCGCCTTCGCCGACATCGCCATTCCCGAC AAGATCCTGACGTTGCCGATCATCGCGTCCTTCGTGGTGACGCTGGCGCATTTCGTGGTGCTGTACCGGCTGCGGGTGAA GATCAACGCGCCGCGGATGTTCGGCGCCATGATCGCGGCGATGTCGGTGCAGTGGACGGTGTCCCGCGCGGTGGCGCAGG GCCTGATCACCGAGCACCTCGCCTTCGCCCGCACCTCGAAAGGCGGCCTCACCCTGATGTCGGTCGAATTCCAGGCGTTC TGGGAGGCCGTGATCGGCGTGCTGCTGCTGATCGGCGCCGGCGTTCTGATCGCCTCGAACTCCTTCCGCCAGATTCACGA GATCTATATCTTCGCCGGCGTGCTGGTGTTGCAGAGCCTGCCGTTCCTGGCGGCGGTGGCGATCGCGATCCTGGAGAATT CGCGAATCAATTCGTTCCAGTGGTGGACCGACACCCGAATCCGTACCGCCGAGCTGATCGGTCTGCGCCCGGTGACGCTG CCCCCGGCGATCCCGGCCCGGCAGAAGGTCGCCCAGGAAATCCACCACGACGCCGCCTGA
Upstream 100 bases:
>100_bases CCGACGGGGCTCAGCGTTATGCTTGAAGTGCTACCGCCTTGGTCGGACCTCGGGGACGGGTCCGCTGACCAGCCCTCTGG CCCCCGTATGGTTTAGTGCG
Downstream 100 bases:
>100_bases GGACTTTTCAGACCCATCGGCGGCTGACTGGTTGGACGAGGAGAGGCGCGTAAATATCTGTGTGCTCGGACCAATTTCAC GCAAACCGGCGCCGGTCGCC
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: PGA synthase; Poly-beta-1,6-GlcNAc synthase; Biofilm PGA synthesis protein PgaC; N-acetylglucosaminyltransferase PgaC [H]
Number of amino acids: Translated: 899; Mature: 899
Protein sequence:
>899_residues MRAVVAVLLLVVAAHAGLWGLLRDKQKAPDFTGILPSVSYAPFDGSAHPDVDNIPSAERIRSDLKTLSPMTRAIRLYSST GGVELVPPIANEVGLKVTVGAWIDKFSDRNEREMQAAIELAKRNSNVNGIVVGNETIYRADQKVEDLIKLIQRVKSQVNV PVTTGEIWNIWIENPELASSVDFIAAHILPYWEGFSDKQAVDQALIIYQKLRDAFPGKRIVIAEFGWPSAGYNLKSAIPG PFEQAVTLRNFVSRAEAIGMEYNIVEAIDQPWKFFEGGVGPYWGILNASREPKFAWTGPVVDPAYWKLAGIALLVGILLS LPILQLAAPTAMQTLLLSSAAHGVGAWVATVFAYWTGHYFLFGSAFALTLGMILLVPLVAIALARIEEIAVVAFGRKPRR LITRAMTDVQEKKQTAALAKGEPVRFPKVSIHVPAYFEPPEMLKQTLDAVARLDYPNFECVVIINNTPDPAFTQPIQDHC RELGERFKFINAEKVQGFKAGALRIAMDRTAADAEIIGIIDADYVVTPDWLKDLVPAFDDPRVGLVQAPQEHRDGDRSLM HYIMNGEYAGFFDIGMVQRNEVNGIIVHGTMCLIRRAAMDMAGGWSSDTICEDSDLGLEIMEHGWLTHYTNTRYGYGLLP DTYEAFKKQRHRWAYGGFQIIKKHWRRFLPGNSRLSRDQRREFGLGWLNWLGAESLGVVVAILNLIWVPIVAFADIAIPD KILTLPIIASFVVTLAHFVVLYRLRVKINAPRMFGAMIAAMSVQWTVSRAVAQGLITEHLAFARTSKGGLTLMSVEFQAF WEAVIGVLLLIGAGVLIASNSFRQIHEIYIFAGVLVLQSLPFLAAVAIAILENSRINSFQWWTDTRIRTAELIGLRPVTL PPAIPARQKVAQEIHHDAA
Sequences:
>Translated_899_residues MRAVVAVLLLVVAAHAGLWGLLRDKQKAPDFTGILPSVSYAPFDGSAHPDVDNIPSAERIRSDLKTLSPMTRAIRLYSST GGVELVPPIANEVGLKVTVGAWIDKFSDRNEREMQAAIELAKRNSNVNGIVVGNETIYRADQKVEDLIKLIQRVKSQVNV PVTTGEIWNIWIENPELASSVDFIAAHILPYWEGFSDKQAVDQALIIYQKLRDAFPGKRIVIAEFGWPSAGYNLKSAIPG PFEQAVTLRNFVSRAEAIGMEYNIVEAIDQPWKFFEGGVGPYWGILNASREPKFAWTGPVVDPAYWKLAGIALLVGILLS LPILQLAAPTAMQTLLLSSAAHGVGAWVATVFAYWTGHYFLFGSAFALTLGMILLVPLVAIALARIEEIAVVAFGRKPRR LITRAMTDVQEKKQTAALAKGEPVRFPKVSIHVPAYFEPPEMLKQTLDAVARLDYPNFECVVIINNTPDPAFTQPIQDHC RELGERFKFINAEKVQGFKAGALRIAMDRTAADAEIIGIIDADYVVTPDWLKDLVPAFDDPRVGLVQAPQEHRDGDRSLM HYIMNGEYAGFFDIGMVQRNEVNGIIVHGTMCLIRRAAMDMAGGWSSDTICEDSDLGLEIMEHGWLTHYTNTRYGYGLLP DTYEAFKKQRHRWAYGGFQIIKKHWRRFLPGNSRLSRDQRREFGLGWLNWLGAESLGVVVAILNLIWVPIVAFADIAIPD KILTLPIIASFVVTLAHFVVLYRLRVKINAPRMFGAMIAAMSVQWTVSRAVAQGLITEHLAFARTSKGGLTLMSVEFQAF WEAVIGVLLLIGAGVLIASNSFRQIHEIYIFAGVLVLQSLPFLAAVAIAILENSRINSFQWWTDTRIRTAELIGLRPVTL PPAIPARQKVAQEIHHDAA >Mature_899_residues MRAVVAVLLLVVAAHAGLWGLLRDKQKAPDFTGILPSVSYAPFDGSAHPDVDNIPSAERIRSDLKTLSPMTRAIRLYSST GGVELVPPIANEVGLKVTVGAWIDKFSDRNEREMQAAIELAKRNSNVNGIVVGNETIYRADQKVEDLIKLIQRVKSQVNV PVTTGEIWNIWIENPELASSVDFIAAHILPYWEGFSDKQAVDQALIIYQKLRDAFPGKRIVIAEFGWPSAGYNLKSAIPG PFEQAVTLRNFVSRAEAIGMEYNIVEAIDQPWKFFEGGVGPYWGILNASREPKFAWTGPVVDPAYWKLAGIALLVGILLS LPILQLAAPTAMQTLLLSSAAHGVGAWVATVFAYWTGHYFLFGSAFALTLGMILLVPLVAIALARIEEIAVVAFGRKPRR LITRAMTDVQEKKQTAALAKGEPVRFPKVSIHVPAYFEPPEMLKQTLDAVARLDYPNFECVVIINNTPDPAFTQPIQDHC RELGERFKFINAEKVQGFKAGALRIAMDRTAADAEIIGIIDADYVVTPDWLKDLVPAFDDPRVGLVQAPQEHRDGDRSLM HYIMNGEYAGFFDIGMVQRNEVNGIIVHGTMCLIRRAAMDMAGGWSSDTICEDSDLGLEIMEHGWLTHYTNTRYGYGLLP DTYEAFKKQRHRWAYGGFQIIKKHWRRFLPGNSRLSRDQRREFGLGWLNWLGAESLGVVVAILNLIWVPIVAFADIAIPD KILTLPIIASFVVTLAHFVVLYRLRVKINAPRMFGAMIAAMSVQWTVSRAVAQGLITEHLAFARTSKGGLTLMSVEFQAF WEAVIGVLLLIGAGVLIASNSFRQIHEIYIFAGVLVLQSLPFLAAVAIAILENSRINSFQWWTDTRIRTAELIGLRPVTL PPAIPARQKVAQEIHHDAA
Specific function: Probable N-acetylglucosaminyltransferase that catalyzes the polymerization of single monomer units of UDP-N- acetylglucosamine to produce the linear homopolymer poly-beta-1,6- N-acetyl-D-glucosamine (PGA), a biofilm adhesin polysaccharide [H]
COG id: COG1215
COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1787259, Length=257, Percent_Identity=29.5719844357977, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI87082284, Length=244, Percent_Identity=27.0491803278689, Blast_Score=73, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6321721, Length=271, Percent_Identity=24.7232472324723, Blast_Score=75, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 99710; Mature: 99710
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAVVAVLLLVVAAHAGLWGLLRDKQKAPDFTGILPSVSYAPFDGSAHPDVDNIPSAERI CHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH RSDLKTLSPMTRAIRLYSSTGGVELVPPIANEVGLKVTVGAWIDKFSDRNEREMQAAIEL HHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHCCCEEEHHHHHHHHCCCCHHHHHHHHHH AKRNSNVNGIVVGNETIYRADQKVEDLIKLIQRVKSQVNVPVTTGEIWNIWIENPELASS HHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEECCCHHHHH VDFIAAHILPYWEGFSDKQAVDQALIIYQKLRDAFPGKRIVIAEFGWPSAGYNLKSAIPG HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC PFEQAVTLRNFVSRAEAIGMEYNIVEAIDQPWKFFEGGVGPYWGILNASREPKFAWTGPV CHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCCCCCHHHHCCCCCCCCCEECCCC VDPAYWKLAGIALLVGILLSLPILQLAAPTAMQTLLLSSAAHGVGAWVATVFAYWTGHYF CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHH LFGSAFALTLGMILLVPLVAIALARIEEIAVVAFGRKPRRLITRAMTDVQEKKQTAALAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCC GEPVRFPKVSIHVPAYFEPPEMLKQTLDAVARLDYPNFECVVIINNTPDPAFTQPIQDHC CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHH RELGERFKFINAEKVQGFKAGALRIAMDRTAADAEIIGIIDADYVVTPDWLKDLVPAFDD HHHHHHHCCCCHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCEECHHHHHHHHCCCCC PRVGLVQAPQEHRDGDRSLMHYIMNGEYAGFFDIGMVQRNEVNGIIVHGTMCLIRRAAMD CCCCCCCCCHHHCCHHHHHHHHHHCCCCCCEEEECCEEECCCCEEEEEHHHHHHHHHHHH MAGGWSSDTICEDSDLGLEIMEHGWLTHYTNTRYGYGLLPDTYEAFKKQRHRWAYGGFQI HCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH IKKHWRRFLPGNSRLSRDQRREFGLGWLNWLGAESLGVVVAILNLIWVPIVAFADIAIPD HHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC KILTLPIIASFVVTLAHFVVLYRLRVKINAPRMFGAMIAAMSVQWTVSRAVAQGLITEHL HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFARTSKGGLTLMSVEFQAFWEAVIGVLLLIGAGVLIASNSFRQIHEIYIFAGVLVLQSL HHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHC PFLAAVAIAILENSRINSFQWWTDTRIRTAELIGLRPVTLPPAIPARQKVAQEIHHDAA HHHHHHHHHHHHCCCCCCEEEECCCCEEHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure MRAVVAVLLLVVAAHAGLWGLLRDKQKAPDFTGILPSVSYAPFDGSAHPDVDNIPSAERI CHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH RSDLKTLSPMTRAIRLYSSTGGVELVPPIANEVGLKVTVGAWIDKFSDRNEREMQAAIEL HHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHCCCEEEHHHHHHHHCCCCHHHHHHHHHH AKRNSNVNGIVVGNETIYRADQKVEDLIKLIQRVKSQVNVPVTTGEIWNIWIENPELASS HHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEECCCHHHHH VDFIAAHILPYWEGFSDKQAVDQALIIYQKLRDAFPGKRIVIAEFGWPSAGYNLKSAIPG HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC PFEQAVTLRNFVSRAEAIGMEYNIVEAIDQPWKFFEGGVGPYWGILNASREPKFAWTGPV CHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCCCCCHHHHCCCCCCCCCEECCCC VDPAYWKLAGIALLVGILLSLPILQLAAPTAMQTLLLSSAAHGVGAWVATVFAYWTGHYF CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHH LFGSAFALTLGMILLVPLVAIALARIEEIAVVAFGRKPRRLITRAMTDVQEKKQTAALAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCC GEPVRFPKVSIHVPAYFEPPEMLKQTLDAVARLDYPNFECVVIINNTPDPAFTQPIQDHC CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHH RELGERFKFINAEKVQGFKAGALRIAMDRTAADAEIIGIIDADYVVTPDWLKDLVPAFDD HHHHHHHCCCCHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCEECHHHHHHHHCCCCC PRVGLVQAPQEHRDGDRSLMHYIMNGEYAGFFDIGMVQRNEVNGIIVHGTMCLIRRAAMD CCCCCCCCCHHHCCHHHHHHHHHHCCCCCCEEEECCEEECCCCEEEEEHHHHHHHHHHHH MAGGWSSDTICEDSDLGLEIMEHGWLTHYTNTRYGYGLLPDTYEAFKKQRHRWAYGGFQI HCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH IKKHWRRFLPGNSRLSRDQRREFGLGWLNWLGAESLGVVVAILNLIWVPIVAFADIAIPD HHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC KILTLPIIASFVVTLAHFVVLYRLRVKINAPRMFGAMIAAMSVQWTVSRAVAQGLITEHL HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFARTSKGGLTLMSVEFQAFWEAVIGVLLLIGAGVLIASNSFRQIHEIYIFAGVLVLQSL HHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHC PFLAAVAIAILENSRINSFQWWTDTRIRTAELIGLRPVTLPPAIPARQKVAQEIHHDAA HHHHHHHHHHHHCCCCCCEEEECCCCEEHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]