| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86749904
Identifier: 86749904
GI number: 86749904
Start: 3176617
End: 3177645
Strand: Direct
Name: 86749904
Synonym: RPB_2787
Alternate gene names: NA
Gene position: 3176617-3177645 (Clockwise)
Preceding gene: 86749898
Following gene: 86749905
Centisome position: 59.58
GC content: 64.14
Gene sequence:
>1029_bases ATGTCCGCTGGCTCGACGGCATTGTCGGCACGGCCGCAAGACTCGCAGGATGGAACGTCACGACGACGTCCTGGGATCGC GGACTCGTGCAGGATCACCATTATTTCCACACCCCGGATCTGTTCGAAGCAGCGGGCCTGCCGCTGTCGATCGAAGGCTG GGGACGCTTTCTGTCGCTCGAGGCCGTGCCGGCCCGAGATTTCGGAAGCTCTGGCGGCGCCTTTTCGCGGAACCCTTGTG GTCGGCTACGAACTGCCAGATCTGCTCTGCAGGATTTTCGACGAAGCGGGAATCGCGGTCATCGATTTGATTCTGTATCC CGTGCGCTTCCTCGACGACGTCGTGTTCGCCGCGCGAACCAACCGGGCCGCGCTCCATCGATTGCTGCTGCACGACATGC TCGATCCACGCGAGTGCATTCTGCGCGCCGGCTTCGTGCGCAGCAAGGCGAGCTTCATGCGGCCGCTGGGCCTGACGCCC GGGACGACCATTATTCTCGGACAGGTCCCCGACGATCGATCGGTGCTCGACATCGGCACCGGACGCTTCACCCATCTGGG CGATCATCTGCCGGCTCTGATCGATCTCTGCGCCAGATCCGCCGCGACACTGTTCAAGCCTCACCCCTACGATCCGCCGG ACTCCGCAACGCGCAAGGCGATGAGCTCGTTGCGGTCGGTGACCTCGACCGACATCAATCTTTACCAACTGCTGGCGCAG CCCGAGACCGAGACCGTCTGCGCGCTGAATTCCAGCGGCCTGATCGAGGCGCGGCTGTTCGGCAAGCAGACGATTGCCCT GAAGGAGCCGGCTGTCAGGTTCGGCGAGGCCCCGCCGACGGATGGCGGCGGCTTCGGTGACGCGGTGCCGCAGAATGCCG GCTGGTACTCGCCGCGAACCTGGGAGGCGCTGCTGGCCGGGCATGAAGACATCCTATCGAAAACGCCGTCTTCGCTGGAA AAGGATCGCCTGAGGCGTGCGCTGAATGCCGACTGGGGCTTCGGGCATATCGACAGGGTCGTCGCCTGA
Upstream 100 bases:
>100_bases GAGCCGACGTGAAATCCCATGGTTGCAAGGCTCTCTCTGACCGCTGACCTTCTCCGTCCGTTTCGGGTTGGACCGACCTG GGAAAGCGCGACCTGGAAAC
Downstream 100 bases:
>100_bases TGAACGAGCGCTGGGACACGATCATCTCGCTGCTGCAGGAGCAGAGCTTCGCCGACGCCATGGCCAGCCTCGATGCGATC TCCCATGATGACCCAATCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MSAGSTALSARPQDSQDGTSRRRPGIADSCRITIISTPRICSKQRACRCRSKAGDAFCRSRPCRPEISEALAAPFRGTLV VGYELPDLLCRIFDEAGIAVIDLILYPVRFLDDVVFAARTNRAALHRLLLHDMLDPRECILRAGFVRSKASFMRPLGLTP GTTIILGQVPDDRSVLDIGTGRFTHLGDHLPALIDLCARSAATLFKPHPYDPPDSATRKAMSSLRSVTSTDINLYQLLAQ PETETVCALNSSGLIEARLFGKQTIALKEPAVRFGEAPPTDGGGFGDAVPQNAGWYSPRTWEALLAGHEDILSKTPSSLE KDRLRRALNADWGFGHIDRVVA
Sequences:
>Translated_342_residues MSAGSTALSARPQDSQDGTSRRRPGIADSCRITIISTPRICSKQRACRCRSKAGDAFCRSRPCRPEISEALAAPFRGTLV VGYELPDLLCRIFDEAGIAVIDLILYPVRFLDDVVFAARTNRAALHRLLLHDMLDPRECILRAGFVRSKASFMRPLGLTP GTTIILGQVPDDRSVLDIGTGRFTHLGDHLPALIDLCARSAATLFKPHPYDPPDSATRKAMSSLRSVTSTDINLYQLLAQ PETETVCALNSSGLIEARLFGKQTIALKEPAVRFGEAPPTDGGGFGDAVPQNAGWYSPRTWEALLAGHEDILSKTPSSLE KDRLRRALNADWGFGHIDRVVA >Mature_341_residues SAGSTALSARPQDSQDGTSRRRPGIADSCRITIISTPRICSKQRACRCRSKAGDAFCRSRPCRPEISEALAAPFRGTLVV GYELPDLLCRIFDEAGIAVIDLILYPVRFLDDVVFAARTNRAALHRLLLHDMLDPRECILRAGFVRSKASFMRPLGLTPG TTIILGQVPDDRSVLDIGTGRFTHLGDHLPALIDLCARSAATLFKPHPYDPPDSATRKAMSSLRSVTSTDINLYQLLAQP ETETVCALNSSGLIEARLFGKQTIALKEPAVRFGEAPPTDGGGFGDAVPQNAGWYSPRTWEALLAGHEDILSKTPSSLEK DRLRRALNADWGFGHIDRVVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37262; Mature: 37131
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAGSTALSARPQDSQDGTSRRRPGIADSCRITIISTPRICSKQRACRCRSKAGDAFCRS CCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHC RPCRPEISEALAAPFRGTLVVGYELPDLLCRIFDEAGIAVIDLILYPVRFLDDVVFAART CCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC NRAALHRLLLHDMLDPRECILRAGFVRSKASFMRPLGLTPGTTIILGQVPDDRSVLDIGT CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEECCC GRFTHLGDHLPALIDLCARSAATLFKPHPYDPPDSATRKAMSSLRSVTSTDINLYQLLAQ CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHC PETETVCALNSSGLIEARLFGKQTIALKEPAVRFGEAPPTDGGGFGDAVPQNAGWYSPRT CCCCEEEEECCCCCEEEECCCCEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH WEALLAGHEDILSKTPSSLEKDRLRRALNADWGFGHIDRVVA HHHHHHCHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHCC >Mature Secondary Structure SAGSTALSARPQDSQDGTSRRRPGIADSCRITIISTPRICSKQRACRCRSKAGDAFCRS CCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHC RPCRPEISEALAAPFRGTLVVGYELPDLLCRIFDEAGIAVIDLILYPVRFLDDVVFAART CCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC NRAALHRLLLHDMLDPRECILRAGFVRSKASFMRPLGLTPGTTIILGQVPDDRSVLDIGT CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEECCC GRFTHLGDHLPALIDLCARSAATLFKPHPYDPPDSATRKAMSSLRSVTSTDINLYQLLAQ CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHC PETETVCALNSSGLIEARLFGKQTIALKEPAVRFGEAPPTDGGGFGDAVPQNAGWYSPRT CCCCEEEEECCCCCEEEECCCCEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH WEALLAGHEDILSKTPSSLEKDRLRRALNADWGFGHIDRVVA HHHHHHCHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA