| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86749905
Identifier: 86749905
GI number: 86749905
Start: 3177645
End: 3178577
Strand: Direct
Name: 86749905
Synonym: RPB_2788
Alternate gene names: NA
Gene position: 3177645-3178577 (Clockwise)
Preceding gene: 86749904
Following gene: 86749906
Centisome position: 59.6
GC content: 64.31
Gene sequence:
>933_bases ATGAACGAGCGCTGGGACACGATCATCTCGCTGCTGCAGGAGCAGAGCTTCGCCGACGCCATGGCCAGCCTCGATGCGAT CTCCCATGATGACCCAATCGACGTCGACGCCTATCTCCTGCGCGCCGTGGCGCAGAAGCAGCTCGGGCTCACGAAGGATG CTGAAATCGAACTCTGGCGCGCGCTGGTCGTCGATCCCTGTGCCGCAGGGGTTCGGGCGGCGCTGGGCGATCTCTTCGTG GAGGATCTGACCCAGCCCGGCCATCCGCATGACTTTCAGCTCGATAGCGGCGAGCGTCAGACCAGCCCACAGATCGACAT GATCCGGCGCGATCACAGCGCGCGCTACGAGTTCGCTGCGCATTGGCTGCGAGCCCATCTGCAACCGCCACGCGACACCA CCGGATTGGATATGTTCTGCGGCAACGGTTACGGCGCGCGGATCCTCGCCGATCGCTGCGGTGCGCGGATCGTCGGGATC GACGGCTCGGCGCCGGCGGTCGCCCTCGCAGAGACGGCCTATGGCGGCCACCGTGTGGTCTTCCGGCAGGCCTGTTTCCC GTTCGAGCTGACGAGAAACGCCGCCGACTTCGCTGTCTGCTTCGAATCCCTCGAGCACGTCGAGGATTGCGATGATTTCC TCCGGCAAGTGGGCGCCGCGACACGAGGGCCGATACTGCTGTCGTTTCCGCTCGAAAGTGGACTACCCTTCGCCGTCAAC CGCGACCTGTTCCGGTTTCACTTCCGGCACTTCAAGGCGGACGAAATCGCCGAGAGGCTGCTGCGGCTGACCGGCCGGCG CGTCATCGAGATGCGCGGGCAGATCGTCTATCGGATCGAGAAGGGCCGTATGAGCGGTCTGCTGGACCCATCACAGATGG AACTGACGCGCCTCGAGGACGACAGCCAGTTCGGGATCGTGATCGCAATCTGA
Upstream 100 bases:
>100_bases ACATCCTATCGAAAACGCCGTCTTCGCTGGAAAAGGATCGCCTGAGGCGTGCGCTGAATGCCGACTGGGGCTTCGGGCAT ATCGACAGGGTCGTCGCCTG
Downstream 100 bases:
>100_bases AACCAGGTGACGACGCCCTGCCGCCTGGCCCGCAGCCGCGGTCACGCCGACATTCCCATGCTATTGTGGAGTGGACGGCA GTGAGCCACACGGGGCCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 310
Protein sequence:
>310_residues MNERWDTIISLLQEQSFADAMASLDAISHDDPIDVDAYLLRAVAQKQLGLTKDAEIELWRALVVDPCAAGVRAALGDLFV EDLTQPGHPHDFQLDSGERQTSPQIDMIRRDHSARYEFAAHWLRAHLQPPRDTTGLDMFCGNGYGARILADRCGARIVGI DGSAPAVALAETAYGGHRVVFRQACFPFELTRNAADFAVCFESLEHVEDCDDFLRQVGAATRGPILLSFPLESGLPFAVN RDLFRFHFRHFKADEIAERLLRLTGRRVIEMRGQIVYRIEKGRMSGLLDPSQMELTRLEDDSQFGIVIAI
Sequences:
>Translated_310_residues MNERWDTIISLLQEQSFADAMASLDAISHDDPIDVDAYLLRAVAQKQLGLTKDAEIELWRALVVDPCAAGVRAALGDLFV EDLTQPGHPHDFQLDSGERQTSPQIDMIRRDHSARYEFAAHWLRAHLQPPRDTTGLDMFCGNGYGARILADRCGARIVGI DGSAPAVALAETAYGGHRVVFRQACFPFELTRNAADFAVCFESLEHVEDCDDFLRQVGAATRGPILLSFPLESGLPFAVN RDLFRFHFRHFKADEIAERLLRLTGRRVIEMRGQIVYRIEKGRMSGLLDPSQMELTRLEDDSQFGIVIAI >Mature_310_residues MNERWDTIISLLQEQSFADAMASLDAISHDDPIDVDAYLLRAVAQKQLGLTKDAEIELWRALVVDPCAAGVRAALGDLFV EDLTQPGHPHDFQLDSGERQTSPQIDMIRRDHSARYEFAAHWLRAHLQPPRDTTGLDMFCGNGYGARILADRCGARIVGI DGSAPAVALAETAYGGHRVVFRQACFPFELTRNAADFAVCFESLEHVEDCDDFLRQVGAATRGPILLSFPLESGLPFAVN RDLFRFHFRHFKADEIAERLLRLTGRRVIEMRGQIVYRIEKGRMSGLLDPSQMELTRLEDDSQFGIVIAI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34712; Mature: 34712
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNERWDTIISLLQEQSFADAMASLDAISHDDPIDVDAYLLRAVAQKQLGLTKDAEIELWR CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH ALVVDPCAAGVRAALGDLFVEDLTQPGHPHDFQLDSGERQTSPQIDMIRRDHSARYEFAA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHH HWLRAHLQPPRDTTGLDMFCGNGYGARILADRCGARIVGIDGSAPAVALAETAYGGHRVV HHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHCCCEEEEECCCCCCEEEHHHCCCCCEEE FRQACFPFELTRNAADFAVCFESLEHVEDCDDFLRQVGAATRGPILLSFPLESGLPFAVN HHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHC RDLFRFHFRHFKADEIAERLLRLTGRRVIEMRGQIVYRIEKGRMSGLLDPSQMELTRLED HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHCCCC DSQFGIVIAI CCCCCEEEEC >Mature Secondary Structure MNERWDTIISLLQEQSFADAMASLDAISHDDPIDVDAYLLRAVAQKQLGLTKDAEIELWR CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH ALVVDPCAAGVRAALGDLFVEDLTQPGHPHDFQLDSGERQTSPQIDMIRRDHSARYEFAA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHH HWLRAHLQPPRDTTGLDMFCGNGYGARILADRCGARIVGIDGSAPAVALAETAYGGHRVV HHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHCCCEEEEECCCCCCEEEHHHCCCCCEEE FRQACFPFELTRNAADFAVCFESLEHVEDCDDFLRQVGAATRGPILLSFPLESGLPFAVN HHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHC RDLFRFHFRHFKADEIAERLLRLTGRRVIEMRGQIVYRIEKGRMSGLLDPSQMELTRLED HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHCCCC DSQFGIVIAI CCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA