| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is pcrA [H]
Identifier: 86749818
GI number: 86749818
Start: 3086282
End: 3088342
Strand: Direct
Name: pcrA [H]
Synonym: RPB_2701
Alternate gene names: 86749818
Gene position: 3086282-3088342 (Clockwise)
Preceding gene: 86749816
Following gene: 86749821
Centisome position: 57.89
GC content: 67.88
Gene sequence:
>2061_bases GTGTCTCTGCCCGCAACCTATCTCGACGGCCTCAATCCGGAGCAGCGTTGCGCCGTCGAGCACGGCGTGGGCCAGAGTTC CTGCCCGCCGCTGCTGGTAATTGCCGGCGCCGGCTCGGGCAAGACCAACACGCTGGCGCACCGCGTCGCGCATCTCGTCG TCAACGGCGCCGATCCGCACCGCATCCTGCTGATGACGTTTTCGCGGAGAGCCGCCGCCGAAATGACGCGCCGGGTCGAG CGTATCGCCCGCCGGGTGATGGGCGATGGTGCAGCGCGTGGCGGCGCGCTGAGCTGGGCCGGGACGTTTCACGGCATCGG CGCGCGGCTGCTGCGCGAACATGCCGAGCGCATCGGGCTCGATCCGGCGTTCACGATCCACGACCGCGAGGATTCCGCCG ACCTGATGAATCTGGTCCGCCACGACCTCGGCTTCTCCAGGACCGAAAGCCGGTTTCCCACCAAGGCGACCTGCCTGTCG ATCTACTCGCGCTGCGTCAATGCCGGCCAATCTCTCGATGTCGTGCTCGGCGCCAATTATCCGTGGTGCGCCGGCTGGTC CGCCGAGCTGAAGCAGCTGTTCGCCGGCTATGTCGAGGCGAAGCAGCGCCACAACGTGCTCGATTACGATGATCTGCTGC TGTACTGGGCGCAGACCATGACCGAGCCTTCGCTCGCCGCCGAGATCGGCGGCCGGTTCGACCATGTGCTGGTCGACGAA TATCAAGACACCAACGCGCTGCAGGCGCAGGTGCTGCTCGGACTGAAGCCGGATGGCGGCGGCCTGACCGTGGTCGGCGA CGACGCGCAATCGATCTATTCCTTCCGCGCCGCCACCGTGCGCAACATTCTCGATTTCCCGAAGGCGTTCAGCCCGCCTG CCCGGATCGTCACGCTCGACCGCAATTATCGCTCGACGCAGGCCATCCTCGGCGCCGCCAACGGCGTAATCGATCTCGCC GCCGAGCGCTTCACCAAGAATTTGTGGACCGACCGCGCGAGCGGATCGCCGCCGCAGCTCGTCGCGGTCCGCGACGAGGC CGATCAGGCGCGCTACATCACCGAGCGCGTGCTCGAGCATCGCGAGAGCGGCACCATTCTGAAGCAGCAGGCAGTGCTGT TCCGCACCTCGTCGCATTCGGCGCCGCTCGAACTCGAGCTGACGCGGCGCAACATTCCGTTCGTCAAATTCGGCGGCCTG AAGTTCCTCGACGCCGCCCACGTCAAGGACATGCTGGCGCTGCTGCGCTTCGTGCAGAACCCGCGCGACCGCGTCGCCGG CTTTCGCGTGCTGCTGCTGATGCAGGGAATCGGCCCGGCGTCGGCGCAGAAGACGCTGGACGCGATCACCGCCGCTGCCG ATCCGCTGAAAGCCCTCGCCGCCCTGCCCGCGCCGCCGCGCGCGCCCGATTGGCGCGACTTCGTCGACGCGGTCGGCGAG CTGCGCGACGGCCGCGCCGGCGGCTGGCCGGCCGAGATCGAACGCGCGCGGCTGTGGTACGAACCGCATCTCGATCGCAT CCACGACGATGCGGCGACGCGGCGCGCCGATCTGGTGCAACTGGCGCAGATCGCGTCCGGCTATCCGTCGCGCGAGCGTT TCCTCACCGAGCTGACGCTCGACCCGCCGGACGCGACGTCCGATCAGGCCGGCGTGCCGATGCGCGACGAGGACTATCTG ATCCTGTCGACGATCCATTCCGCCAAGGGTCAGGAATGGAAGTCGGTGTTCGTGCTCAACGTCGTCGACGGCTGCATGCC GTCCGATCTCGGCACCGGCACTTCGGCCGAGATCGAGGAGGAGCGCCGCCTGCTCTATGTGGCGATGACGCGGGCCAAGG ACGATCTGCATCTGGTGGTGCCGCAACGCTTCTTCACCCACGGCCAGAACGTGATGGGCGACCGCCACGTCTATGCGGCG CGCAGCCGGTTCATTCCCGATCGGCTGCTGAACCTGTTCGAGCGCGTGAGCTGGCCGCGGGTCGCGGCCTCGCCCGGCTA TCCGACGCGACAGGCGCCGCCAATCGACATCGGCGCGCGGATGCGCGGGATGTGGCGATGA
Upstream 100 bases:
>100_bases GTGGATGATGCGGCAAACAGCGATGCCGGGTCGCGATCGGCGTTGCGAACAAAGCAGGAATCAGGGACCGTCGCGGCTTC ATCCCGACAGGCGCTGATTC
Downstream 100 bases:
>100_bases ATCAGGCGGCGGCGCTCACGCCGCCACAGTGACCGCGCCGCCCAGCGCGTTGTCGACGATCACCGGACTGTCGAACCAGG AAATCACCGGCTCGGCGCCG
Product: UvrD/REP helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 686; Mature: 685
Protein sequence:
>686_residues MSLPATYLDGLNPEQRCAVEHGVGQSSCPPLLVIAGAGSGKTNTLAHRVAHLVVNGADPHRILLMTFSRRAAAEMTRRVE RIARRVMGDGAARGGALSWAGTFHGIGARLLREHAERIGLDPAFTIHDREDSADLMNLVRHDLGFSRTESRFPTKATCLS IYSRCVNAGQSLDVVLGANYPWCAGWSAELKQLFAGYVEAKQRHNVLDYDDLLLYWAQTMTEPSLAAEIGGRFDHVLVDE YQDTNALQAQVLLGLKPDGGGLTVVGDDAQSIYSFRAATVRNILDFPKAFSPPARIVTLDRNYRSTQAILGAANGVIDLA AERFTKNLWTDRASGSPPQLVAVRDEADQARYITERVLEHRESGTILKQQAVLFRTSSHSAPLELELTRRNIPFVKFGGL KFLDAAHVKDMLALLRFVQNPRDRVAGFRVLLLMQGIGPASAQKTLDAITAAADPLKALAALPAPPRAPDWRDFVDAVGE LRDGRAGGWPAEIERARLWYEPHLDRIHDDAATRRADLVQLAQIASGYPSRERFLTELTLDPPDATSDQAGVPMRDEDYL ILSTIHSAKGQEWKSVFVLNVVDGCMPSDLGTGTSAEIEEERRLLYVAMTRAKDDLHLVVPQRFFTHGQNVMGDRHVYAA RSRFIPDRLLNLFERVSWPRVAASPGYPTRQAPPIDIGARMRGMWR
Sequences:
>Translated_686_residues MSLPATYLDGLNPEQRCAVEHGVGQSSCPPLLVIAGAGSGKTNTLAHRVAHLVVNGADPHRILLMTFSRRAAAEMTRRVE RIARRVMGDGAARGGALSWAGTFHGIGARLLREHAERIGLDPAFTIHDREDSADLMNLVRHDLGFSRTESRFPTKATCLS IYSRCVNAGQSLDVVLGANYPWCAGWSAELKQLFAGYVEAKQRHNVLDYDDLLLYWAQTMTEPSLAAEIGGRFDHVLVDE YQDTNALQAQVLLGLKPDGGGLTVVGDDAQSIYSFRAATVRNILDFPKAFSPPARIVTLDRNYRSTQAILGAANGVIDLA AERFTKNLWTDRASGSPPQLVAVRDEADQARYITERVLEHRESGTILKQQAVLFRTSSHSAPLELELTRRNIPFVKFGGL KFLDAAHVKDMLALLRFVQNPRDRVAGFRVLLLMQGIGPASAQKTLDAITAAADPLKALAALPAPPRAPDWRDFVDAVGE LRDGRAGGWPAEIERARLWYEPHLDRIHDDAATRRADLVQLAQIASGYPSRERFLTELTLDPPDATSDQAGVPMRDEDYL ILSTIHSAKGQEWKSVFVLNVVDGCMPSDLGTGTSAEIEEERRLLYVAMTRAKDDLHLVVPQRFFTHGQNVMGDRHVYAA RSRFIPDRLLNLFERVSWPRVAASPGYPTRQAPPIDIGARMRGMWR >Mature_685_residues SLPATYLDGLNPEQRCAVEHGVGQSSCPPLLVIAGAGSGKTNTLAHRVAHLVVNGADPHRILLMTFSRRAAAEMTRRVER IARRVMGDGAARGGALSWAGTFHGIGARLLREHAERIGLDPAFTIHDREDSADLMNLVRHDLGFSRTESRFPTKATCLSI YSRCVNAGQSLDVVLGANYPWCAGWSAELKQLFAGYVEAKQRHNVLDYDDLLLYWAQTMTEPSLAAEIGGRFDHVLVDEY QDTNALQAQVLLGLKPDGGGLTVVGDDAQSIYSFRAATVRNILDFPKAFSPPARIVTLDRNYRSTQAILGAANGVIDLAA ERFTKNLWTDRASGSPPQLVAVRDEADQARYITERVLEHRESGTILKQQAVLFRTSSHSAPLELELTRRNIPFVKFGGLK FLDAAHVKDMLALLRFVQNPRDRVAGFRVLLLMQGIGPASAQKTLDAITAAADPLKALAALPAPPRAPDWRDFVDAVGEL RDGRAGGWPAEIERARLWYEPHLDRIHDDAATRRADLVQLAQIASGYPSRERFLTELTLDPPDATSDQAGVPMRDEDYLI LSTIHSAKGQEWKSVFVLNVVDGCMPSDLGTGTSAEIEEERRLLYVAMTRAKDDLHLVVPQRFFTHGQNVMGDRHVYAAR SRFIPDRLLNLFERVSWPRVAASPGYPTRQAPPIDIGARMRGMWR
Specific function: Essential helicase [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367296, Length=695, Percent_Identity=31.3669064748201, Blast_Score=281, Evalue=1e-76, Organism=Escherichia coli, GI48994965, Length=665, Percent_Identity=28.4210526315789, Blast_Score=192, Evalue=7e-50, Organism=Saccharomyces cerevisiae, GI6322369, Length=477, Percent_Identity=27.4633123689727, Blast_Score=138, Evalue=3e-33,
Paralogues:
None
Copy number: 3000 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005751 - InterPro: IPR013986 - InterPro: IPR014017 - InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 75793; Mature: 75662
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPATYLDGLNPEQRCAVEHGVGQSSCPPLLVIAGAGSGKTNTLAHRVAHLVVNGADPH CCCCCHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCC RILLMTFSRRAAAEMTRRVERIARRVMGDGAARGGALSWAGTFHGIGARLLREHAERIGL EEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC DPAFTIHDREDSADLMNLVRHDLGFSRTESRFPTKATCLSIYSRCVNAGQSLDVVLGANY CCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC PWCAGWSAELKQLFAGYVEAKQRHNVLDYDDLLLYWAQTMTEPSLAAEIGGRFDHVLVDE CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCEEECCC YQDTNALQAQVLLGLKPDGGGLTVVGDDAQSIYSFRAATVRNILDFPKAFSPPARIVTLD CCCCCHHEEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC RNYRSTQAILGAANGVIDLAAERFTKNLWTDRASGSPPQLVAVRDEADQARYITERVLEH CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHH RESGTILKQQAVLFRTSSHSAPLELELTRRNIPFVKFGGLKFLDAAHVKDMLALLRFVQN HHCCCEEHHHEHEEEECCCCCCEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHCC PRDRVAGFRVLLLMQGIGPASAQKTLDAITAAADPLKALAALPAPPRAPDWRDFVDAVGE HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LRDGRAGGWPAEIERARLWYEPHLDRIHDDAATRRADLVQLAQIASGYPSRERFLTELTL HCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEC DPPDATSDQAGVPMRDEDYLILSTIHSAKGQEWKSVFVLNVVDGCMPSDLGTGTSAEIEE CCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCHHHEEEEEHHCCCCCCCCCCCCCCHHHH ERRLLYVAMTRAKDDLHLVVPQRFFTHGQNVMGDRHVYAARSRFIPDRLLNLFERVSWPR HHEEEEEEEECCCCCEEEEECHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCC VAASPGYPTRQAPPIDIGARMRGMWR EECCCCCCCCCCCCCCCCHHCCCCCC >Mature Secondary Structure SLPATYLDGLNPEQRCAVEHGVGQSSCPPLLVIAGAGSGKTNTLAHRVAHLVVNGADPH CCCCHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCC RILLMTFSRRAAAEMTRRVERIARRVMGDGAARGGALSWAGTFHGIGARLLREHAERIGL EEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCC DPAFTIHDREDSADLMNLVRHDLGFSRTESRFPTKATCLSIYSRCVNAGQSLDVVLGANY CCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC PWCAGWSAELKQLFAGYVEAKQRHNVLDYDDLLLYWAQTMTEPSLAAEIGGRFDHVLVDE CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCEEECCC YQDTNALQAQVLLGLKPDGGGLTVVGDDAQSIYSFRAATVRNILDFPKAFSPPARIVTLD CCCCCHHEEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC RNYRSTQAILGAANGVIDLAAERFTKNLWTDRASGSPPQLVAVRDEADQARYITERVLEH CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHH RESGTILKQQAVLFRTSSHSAPLELELTRRNIPFVKFGGLKFLDAAHVKDMLALLRFVQN HHCCCEEHHHEHEEEECCCCCCEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHCC PRDRVAGFRVLLLMQGIGPASAQKTLDAITAAADPLKALAALPAPPRAPDWRDFVDAVGE HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LRDGRAGGWPAEIERARLWYEPHLDRIHDDAATRRADLVQLAQIASGYPSRERFLTELTL HCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEC DPPDATSDQAGVPMRDEDYLILSTIHSAKGQEWKSVFVLNVVDGCMPSDLGTGTSAEIEE CCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCHHHEEEEEHHCCCCCCCCCCCCCCHHHH ERRLLYVAMTRAKDDLHLVVPQRFFTHGQNVMGDRHVYAARSRFIPDRLLNLFERVSWPR HHEEEEEEEECCCCCEEEEECHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCC VAASPGYPTRQAPPIDIGARMRGMWR EECCCCCCCCCCCCCCCCHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA