Definition | Rhodopseudomonas palustris HaA2, complete genome. |
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Accession | NC_007778 |
Length | 5,331,656 |
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The map label for this gene is pdxA [H]
Identifier: 86749596
GI number: 86749596
Start: 2832295
End: 2833299
Strand: Reverse
Name: pdxA [H]
Synonym: RPB_2476
Alternate gene names: 86749596
Gene position: 2833299-2832295 (Counterclockwise)
Preceding gene: 86749597
Following gene: 86749595
Centisome position: 53.14
GC content: 68.26
Gene sequence:
>1005_bases ATGACCAGACCACTAGCGTTGTCGCTCGGCGAGCCCGCGGGCATCGGCCCCGATATCACGATCGCGGCGTGGATGCGCCG CGACGCGGTCGATCTTCCGCCGTTTTACCTGCTCGGCGACCGCGACTGCGTGGCGCGACGCGCGCAGCTGTTGGGCGTCG ACATCCCGATCGCTGATGTGTGTGTCGAGGACGCTGCCGATACCTTTGCGACCGCCCTGCCCGTCGTGGCGACTGGACAT CCCGCGACTGCCGAGCCGGGAAGACCCAACGCCACCAGCGCCACCGCTGCGATCGCGTCGATCCGTCGGGCGGTGGACGA TGTCGGCGCGGGCCGCGCGGCCGCGGTGGTCACCAATCCGATCGCCAAAAGCGTTTTGTATCAGGCCGGCTTTGCACATC CCGGCCACACCGAATTCCTCGCCGAACTGGCGCGCAGCGATGGCGTCGTGCCGCAGCCGGTGATGATGCTGTGGTGTCCG AGCCTCGCCGTCGTGCCGGTCACGATCCATGTTTCGCTGCGCGACGCGATCGCGCAGCTCACGACCGAGCTGATCGTTTC GACCGCACGCATCGTGGTGCAAGATCTGCGACGCCGCCTCGGCATTGCCGCGCCGCGGCTCGCGGTCGCCGGCCTCAATC CGCACGCCGGCGAAGACGGCGCGCTCGGCAGCGAAGATCGCAATATCGTCGCGCCGGCGGTGGAGATCCTGCGCCGCGAA GGGATCGACGCCCGCGGTCCGCTGCCTGCCGACACGATGTTTCATGCCGCCGCGCGCAAGCGCTACGACTGCGCGATCTG CATGTATCACGATCAGGCCCTGATCCCGATCAAGACCATCGCCTTCGACGAAGGCGTCAACGTCACTCTCGGTCTCCCTT TCATCCGCACCTCGCCCGACCACGGCACGGCATTCGACATCGCCGGCACCGGACGCGCCGATCCGTCGAGCCTGATCGCC GCGCTGAAGCTCGCGGCCCGGATGGCTGCGGCGCCTTCGCCATGA
Upstream 100 bases:
>100_bases CGAGTCGCGCAATGCCGCGATGATCGAGTATCGCTAGGACCTCGGCACAGGCGCCGCGCGAAGTCGCCCGGTACGGGCCG CAATCGGCGGCGGACAAAAA
Downstream 100 bases:
>100_bases GTGCGATCGACGGCCTGCCGCCGCTGCGCGACGTCATCAAGCGTCACGATCTCGCCGCGCGAAAATCGCTCGGCCAGAAT TTTCTGCTCGACCTCAATCT
Product: 4-hydroxythreonine-4-phosphate dehydrogenase
Products: NA
Alternate protein names: 4-(phosphohydroxy)-L-threonine dehydrogenase [H]
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MTRPLALSLGEPAGIGPDITIAAWMRRDAVDLPPFYLLGDRDCVARRAQLLGVDIPIADVCVEDAADTFATALPVVATGH PATAEPGRPNATSATAAIASIRRAVDDVGAGRAAAVVTNPIAKSVLYQAGFAHPGHTEFLAELARSDGVVPQPVMMLWCP SLAVVPVTIHVSLRDAIAQLTTELIVSTARIVVQDLRRRLGIAAPRLAVAGLNPHAGEDGALGSEDRNIVAPAVEILRRE GIDARGPLPADTMFHAAARKRYDCAICMYHDQALIPIKTIAFDEGVNVTLGLPFIRTSPDHGTAFDIAGTGRADPSSLIA ALKLAARMAAAPSP
Sequences:
>Translated_334_residues MTRPLALSLGEPAGIGPDITIAAWMRRDAVDLPPFYLLGDRDCVARRAQLLGVDIPIADVCVEDAADTFATALPVVATGH PATAEPGRPNATSATAAIASIRRAVDDVGAGRAAAVVTNPIAKSVLYQAGFAHPGHTEFLAELARSDGVVPQPVMMLWCP SLAVVPVTIHVSLRDAIAQLTTELIVSTARIVVQDLRRRLGIAAPRLAVAGLNPHAGEDGALGSEDRNIVAPAVEILRRE GIDARGPLPADTMFHAAARKRYDCAICMYHDQALIPIKTIAFDEGVNVTLGLPFIRTSPDHGTAFDIAGTGRADPSSLIA ALKLAARMAAAPSP >Mature_333_residues TRPLALSLGEPAGIGPDITIAAWMRRDAVDLPPFYLLGDRDCVARRAQLLGVDIPIADVCVEDAADTFATALPVVATGHP ATAEPGRPNATSATAAIASIRRAVDDVGAGRAAAVVTNPIAKSVLYQAGFAHPGHTEFLAELARSDGVVPQPVMMLWCPS LAVVPVTIHVSLRDAIAQLTTELIVSTARIVVQDLRRRLGIAAPRLAVAGLNPHAGEDGALGSEDRNIVAPAVEILRREG IDARGPLPADTMFHAAARKRYDCAICMYHDQALIPIKTIAFDEGVNVTLGLPFIRTSPDHGTAFDIAGTGRADPSSLIAA LKLAARMAAAPSP
Specific function: Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) [H]
COG id: COG1995
COG function: function code H; Pyridoxal phosphate biosynthesis protein
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pdxA family [H]
Homologues:
Organism=Escherichia coli, GI1786237, Length=331, Percent_Identity=39.8791540785499, Blast_Score=213, Evalue=1e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR005255 [H]
Pfam domain/function: PF04166 PdxA [H]
EC number: =1.1.1.262 [H]
Molecular weight: Translated: 34932; Mature: 34800
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRPLALSLGEPAGIGPDITIAAWMRRDAVDLPPFYLLGDRDCVARRAQLLGVDIPIADV CCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCCHHHH CVEDAADTFATALPVVATGHPATAEPGRPNATSATAAIASIRRAVDDVGAGRAAAVVTNP HHHHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHH IAKSVLYQAGFAHPGHTEFLAELARSDGVVPQPVMMLWCPSLAVVPVTIHVSLRDAIAQL HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEEEEEEHHHHHHHHH TTELIVSTARIVVQDLRRRLGIAAPRLAVAGLNPHAGEDGALGSEDRNIVAPAVEILRRE HHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC GIDARGPLPADTMFHAAARKRYDCAICMYHDQALIPIKTIAFDEGVNVTLGLPFIRTSPD CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCEEEEECCEEEECCC HGTAFDIAGTGRADPSSLIAALKLAARMAAAPSP CCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TRPLALSLGEPAGIGPDITIAAWMRRDAVDLPPFYLLGDRDCVARRAQLLGVDIPIADV CCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCCHHHH CVEDAADTFATALPVVATGHPATAEPGRPNATSATAAIASIRRAVDDVGAGRAAAVVTNP HHHHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHH IAKSVLYQAGFAHPGHTEFLAELARSDGVVPQPVMMLWCPSLAVVPVTIHVSLRDAIAQL HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEEEEEEHHHHHHHHH TTELIVSTARIVVQDLRRRLGIAAPRLAVAGLNPHAGEDGALGSEDRNIVAPAVEILRRE HHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHC GIDARGPLPADTMFHAAARKRYDCAICMYHDQALIPIKTIAFDEGVNVTLGLPFIRTSPD CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCEEEEECCEEEECCC HGTAFDIAGTGRADPSSLIAALKLAARMAAAPSP CCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA