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The map label for this gene is yqgF [C]

Identifier: 86749549

GI number: 86749549

Start: 2786266

End: 2786748

Strand: Reverse

Name: yqgF [C]

Synonym: RPB_2429

Alternate gene names: 86749549

Gene position: 2786748-2786266 (Counterclockwise)

Preceding gene: 86749552

Following gene: 86749548

Centisome position: 52.27

GC content: 68.53

Gene sequence:

>483_bases
ATGCCCGCTCTCATCCTTCCGCTGATCGAAGCCGCCGGCCATTGGCCCGCGCGCGGCTCCCTGCTCGGCCTCGACCTCGG
CACCAAGACCATCGGCGTCGCGGTTTCCGATCCGGATCGCAGGCTCGCCACCGGCATCGAGACCGTCGCGCGCAAGGCTT
TCACCGCGGATGCCCAGCGCCTGCTGGCGCTTGCTGCCGGACGCAACGCCTGCGGCTTCGTGCTGGGACTGCCGCTCAAC
ATGGACGGCAGCGAAGGTCCGCGCGTGCAGTCGACCCGCGCCTTCGCGCGCAATTTCGCTCGCCTCACCGAGCTGCCGAT
CGGGCTATGGGACGAACGGCTATCGACGGCGGCCGTCGAGCGTGAACTGATCGCCAATGACGTCAGCCGCGCCAAGCGGG
CCAAGATCATTGACGAACACGCCGCGATCTACATCCTGCAGGGCGCGCTCGACCGGCTGGCGACGTTGAACCGCGCCGAC
TGA

Upstream 100 bases:

>100_bases
CCGCCGCTCAGCTCGGCGGCTCCTGACAGCGAGGATCGCCGCTCCGGGAGAGGCGCGGGATCGGCTTTGCGCCCGCGGCC
ATGGGCTGCTATGCGGCGCC

Downstream 100 bases:

>100_bases
TCGAGCTTCATTGCGACGTTAACGAATGACGGAATGGTGCGATGAATTGCGTCTGCGGATCGGGCAAACCCTATGACAAT
TGCTGCGGGCCGCTGCTCGC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MPALILPLIEAAGHWPARGSLLGLDLGTKTIGVAVSDPDRRLATGIETVARKAFTADAQRLLALAAGRNACGFVLGLPLN
MDGSEGPRVQSTRAFARNFARLTELPIGLWDERLSTAAVERELIANDVSRAKRAKIIDEHAAIYILQGALDRLATLNRAD

Sequences:

>Translated_160_residues
MPALILPLIEAAGHWPARGSLLGLDLGTKTIGVAVSDPDRRLATGIETVARKAFTADAQRLLALAAGRNACGFVLGLPLN
MDGSEGPRVQSTRAFARNFARLTELPIGLWDERLSTAAVERELIANDVSRAKRAKIIDEHAAIYILQGALDRLATLNRAD
>Mature_159_residues
PALILPLIEAAGHWPARGSLLGLDLGTKTIGVAVSDPDRRLATGIETVARKAFTADAQRLLALAAGRNACGFVLGLPLNM
DGSEGPRVQSTRAFARNFARLTELPIGLWDERLSTAAVERELIANDVSRAKRAKIIDEHAAIYILQGALDRLATLNRAD

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=134, Percent_Identity=32.089552238806, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_RHOP2 (Q2IXC6)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_486045.1
- ProteinModelPortal:   Q2IXC6
- SMR:   Q2IXC6
- STRING:   Q2IXC6
- GeneID:   3909563
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_2429
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- BioCyc:   RPAL316058:RPB_2429-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17134; Mature: 17003

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALILPLIEAAGHWPARGSLLGLDLGTKTIGVAVSDPDRRLATGIETVARKAFTADAQR
CCHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
LLALAAGRNACGFVLGLPLNMDGSEGPRVQSTRAFARNFARLTELPIGLWDERLSTAAVE
HHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
RELIANDVSRAKRAKIIDEHAAIYILQGALDRLATLNRAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PALILPLIEAAGHWPARGSLLGLDLGTKTIGVAVSDPDRRLATGIETVARKAFTADAQR
CHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
LLALAAGRNACGFVLGLPLNMDGSEGPRVQSTRAFARNFARLTELPIGLWDERLSTAAVE
HHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
RELIANDVSRAKRAKIIDEHAAIYILQGALDRLATLNRAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA