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The map label for this gene is ychJ [C]

Identifier: 86749548

GI number: 86749548

Start: 2785835

End: 2786224

Strand: Reverse

Name: ychJ [C]

Synonym: RPB_2428

Alternate gene names: 86749548

Gene position: 2786224-2785835 (Counterclockwise)

Preceding gene: 86749549

Following gene: 86749544

Centisome position: 52.26

GC content: 64.36

Gene sequence:

>390_bases
ATGAATTGCGTCTGCGGATCGGGCAAACCCTATGACAATTGCTGCGGGCCGCTGCTCGCCCGAGCACGGCAGGCGGCGAC
GCCGGAAGCGCTGATGCGGTCGCGCTACGCGGCCTTTGTGCTGAAGGATTTCGACTATATCGTCGAGACCACAGATCCCG
ACATGCGCGACCTGTTCGACCACGACGCCAATCGCGCATGGATGGAGCAGTCGACCTTCGTCGATCTGCTGGTGCTCGAT
AGCCACGAGAAGGGTAGCCGCGGCACCGTCGAATTCGTCGCCCGCTTCAGCCGCGGCGGCGCTGCCGAGCAGACCCACCA
CGAACGCTCGCAATTCCGCAAAGTCCGTGGCCGGTGGTACTTCGCCGAGGGCGTGACGGTCGGGAGCTGA

Upstream 100 bases:

>100_bases
CGATCTACATCCTGCAGGGCGCGCTCGACCGGCTGGCGACGTTGAACCGCGCCGACTGATCGAGCTTCATTGCGACGTTA
ACGAATGACGGAATGGTGCG

Downstream 100 bases:

>100_bases
TCTCACGCTCCCTTCAGAACACTCTGACCAACCTATCCACCCGTCATGGCCGGGCTCGTCCCGGCCATCCACGCCTTTGG
ACGATGCACCGCTGAACAAC

Product: sec-C-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MNCVCGSGKPYDNCCGPLLARARQAATPEALMRSRYAAFVLKDFDYIVETTDPDMRDLFDHDANRAWMEQSTFVDLLVLD
SHEKGSRGTVEFVARFSRGGAAEQTHHERSQFRKVRGRWYFAEGVTVGS

Sequences:

>Translated_129_residues
MNCVCGSGKPYDNCCGPLLARARQAATPEALMRSRYAAFVLKDFDYIVETTDPDMRDLFDHDANRAWMEQSTFVDLLVLD
SHEKGSRGTVEFVARFSRGGAAEQTHHERSQFRKVRGRWYFAEGVTVGS
>Mature_129_residues
MNCVCGSGKPYDNCCGPLLARARQAATPEALMRSRYAAFVLKDFDYIVETTDPDMRDLFDHDANRAWMEQSTFVDLLVLD
SHEKGSRGTVEFVARFSRGGAAEQTHHERSQFRKVRGRWYFAEGVTVGS

Specific function: Unknown

COG id: COG3012

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0225 family [H]

Homologues:

Organism=Escherichia coli, GI1787484, Length=129, Percent_Identity=36.4341085271318, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004027
- InterPro:   IPR023006 [H]

Pfam domain/function: PF02810 SEC-C [H]

EC number: NA

Molecular weight: Translated: 14585; Mature: 14585

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCVCGSGKPYDNCCGPLLARARQAATPEALMRSRYAAFVLKDFDYIVETTDPDMRDLFD
CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHH
HDANRAWMEQSTFVDLLVLDSHEKGSRGTVEFVARFSRGGAAEQTHHERSQFRKVRGRWY
CCCCHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEE
FAEGVTVGS
EECCEEECC
>Mature Secondary Structure
MNCVCGSGKPYDNCCGPLLARARQAATPEALMRSRYAAFVLKDFDYIVETTDPDMRDLFD
CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHH
HDANRAWMEQSTFVDLLVLDSHEKGSRGTVEFVARFSRGGAAEQTHHERSQFRKVRGRWY
CCCCHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEE
FAEGVTVGS
EECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA