Definition | Rhodopseudomonas palustris HaA2, complete genome. |
---|---|
Accession | NC_007778 |
Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is 86749511
Identifier: 86749511
GI number: 86749511
Start: 2742796
End: 2743536
Strand: Direct
Name: 86749511
Synonym: RPB_2391
Alternate gene names: NA
Gene position: 2742796-2743536 (Clockwise)
Preceding gene: 86749510
Following gene: 86749512
Centisome position: 51.44
GC content: 70.04
Gene sequence:
>741_bases ATGCCTCACGATCCGACCAAATCTTCCCAACGACCGCTGACGGACGCTGCCGATCGATCGGTGCGGACCGGCAATTCGTC GGACGAAATCGCCGCCTTCGTCGCCAAGGCGCGGGCGATGACGCCGGGGGCGACCGGCGCGCGCGGCCGGCTGGTGTTTG CGCTCGATGCGACGATGAGCCGGCAGCCGACCTGGGACATGGCCTGCGCGCTGCAGGCCGACATGTTTCGCGAGGCGGAG GCGATCGGCAGCCTCGACATCCGGCTGGTGTATTATCGCGGCCTGAGCGAATGCCGCGCCAGCGGCTGGATCTCGACCAG CGACGAACTGGCGCGGCTGATGGGCCGGATCGACTGCCGCGGCGGCCACACCCAGATCGGTCGGGTGCTGTCCGACACAC GCCGCGAGGCGATCGCCTCGGGGGTGCGCGCGGTGGTGTTCGTCGGCGACGCCATGGAAGAATCGATCGACGATCTGTGC GCGAAAGCCGGCGAACTCGGCATGCTGAAGGTGCCGGTGTTCGTCTTTCAGGAGGGTTACGATCCGGTCGCCGAGCAGAC CTTCCGGGAGATCGCGCGGCTGACCGGCGGCGCCTGGTGCCGGTTCGATCCGGGCGCGGCGGCACAGTTGCGCGAACTGC TGCGCGCGGCTGCGGCCTATGCGGCCGGCGGCCGCGACGCGTTGCTGCGGCTCGCCCGCGGGGGCGGGGGTGCGGCACTG CTGCTCGGGCAGATGAAATAG
Upstream 100 bases:
>100_bases AGGTGAGGTGAGCCGCGGACTTCGGCAGTCGCTGCGCTCCCGGCATTGACCGTCGCCGGGGTAGACGCCACATAAGCCGC GTGATCACGCGCGAGCTTCG
Downstream 100 bases:
>100_bases CCGCGGCGATGCTTTTTGCCGGCACCCATCCTATATGGCATCCATGACTCTGATCGTCGGCGTCGTCGCCGTTTTCGTTC TCTACATGCTGCTGCAGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MPHDPTKSSQRPLTDAADRSVRTGNSSDEIAAFVAKARAMTPGATGARGRLVFALDATMSRQPTWDMACALQADMFREAE AIGSLDIRLVYYRGLSECRASGWISTSDELARLMGRIDCRGGHTQIGRVLSDTRREAIASGVRAVVFVGDAMEESIDDLC AKAGELGMLKVPVFVFQEGYDPVAEQTFREIARLTGGAWCRFDPGAAAQLRELLRAAAAYAAGGRDALLRLARGGGGAAL LLGQMK
Sequences:
>Translated_246_residues MPHDPTKSSQRPLTDAADRSVRTGNSSDEIAAFVAKARAMTPGATGARGRLVFALDATMSRQPTWDMACALQADMFREAE AIGSLDIRLVYYRGLSECRASGWISTSDELARLMGRIDCRGGHTQIGRVLSDTRREAIASGVRAVVFVGDAMEESIDDLC AKAGELGMLKVPVFVFQEGYDPVAEQTFREIARLTGGAWCRFDPGAAAQLRELLRAAAAYAAGGRDALLRLARGGGGAAL LLGQMK >Mature_245_residues PHDPTKSSQRPLTDAADRSVRTGNSSDEIAAFVAKARAMTPGATGARGRLVFALDATMSRQPTWDMACALQADMFREAEA IGSLDIRLVYYRGLSECRASGWISTSDELARLMGRIDCRGGHTQIGRVLSDTRREAIASGVRAVVFVGDAMEESIDDLCA KAGELGMLKVPVFVFQEGYDPVAEQTFREIARLTGGAWCRFDPGAAAQLRELLRAAAAYAAGGRDALLRLARGGGGAALL LGQMK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26299; Mature: 26168
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHDPTKSSQRPLTDAADRSVRTGNSSDEIAAFVAKARAMTPGATGARGRLVFALDATMS CCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC RQPTWDMACALQADMFREAEAIGSLDIRLVYYRGLSECRASGWISTSDELARLMGRIDCR CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHCCC GGHTQIGRVLSDTRREAIASGVRAVVFVGDAMEESIDDLCAKAGELGMLKVPVFVFQEGY CCHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHCCCCCCEEECHHHHHCCCC DPVAEQTFREIARLTGGAWCRFDPGAAAQLRELLRAAAAYAAGGRDALLRLARGGGGAAL CHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEE LLGQMK EEECCC >Mature Secondary Structure PHDPTKSSQRPLTDAADRSVRTGNSSDEIAAFVAKARAMTPGATGARGRLVFALDATMS CCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC RQPTWDMACALQADMFREAEAIGSLDIRLVYYRGLSECRASGWISTSDELARLMGRIDCR CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHCCC GGHTQIGRVLSDTRREAIASGVRAVVFVGDAMEESIDDLCAKAGELGMLKVPVFVFQEGY CCHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHCCCCCCEEECHHHHHCCCC DPVAEQTFREIARLTGGAWCRFDPGAAAQLRELLRAAAAYAAGGRDALLRLARGGGGAAL CHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEE LLGQMK EEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA