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The map label for this gene is ypdF [C]

Identifier: 86749133

GI number: 86749133

Start: 2287428

End: 2289257

Strand: Reverse

Name: ypdF [C]

Synonym: RPB_2010

Alternate gene names: 86749133

Gene position: 2289257-2287428 (Counterclockwise)

Preceding gene: 86749135

Following gene: 86749132

Centisome position: 42.94

GC content: 68.63

Gene sequence:

>1830_bases
ATGTTCGAAGCGCATTTCCAGACGTTCGAGGAGCCGGAAAGCGGCGTTGCCCTCACTGCGCGGCTCGCGGCGTTTCGCGA
GGAGATGGTCCGGCGCCAGCTCACCGGCTTTGTGATTCCACGCGCCGATCAGCAGCAAAACGAATACGTGCCGGCCTGCG
ACGAGCGGCTGGCCTGGCTCACCGGCTTCACCGGCTCGGCCGGCATGGCCGTGGTGCTGGTGCATCGGGCCGCATTGTTC
GTCGATGGCCGCTACACGCTGCAGGCCGCCCAGCAGGTCGACGGCAAGGCCTGGACGATCGAGTCGCTGGTGGAACCGCC
GCCGGAGCGCTGGCTGGAAGCGCATCTGAAAGACGGCGACCGCCTCGGATTTGATCCGTGGCTGCACACTTCTTCGGCAG
TCGAACGGATGCAGGCGGCCTGCGCCAAGGCCAGCGCGGAGCTGGTCGCGGTCGAGAGCAATCCGGTGGATGGGGTGTGG
ACCGAACGACCCGCGCCGCCGCTGGGCCAGGTCAGCATCCACGGGCTCGAATTCTCCGGCGAGAGCGAGGCGGCCAAGCT
CGAGCGCATCCGGGGCGAGCTGACACGGCTGAAGGCCGACGCGCTGGTGCTGTCGGACTCGCACGCGGTGGCCTGGACCT
TCAACATCCGCGGCGCCGACGTGTCGCATACGCCGCTGCCGCTGTCCTACGCGGTTGTGCCGAAGGACGGCCGCCCGACC
ATCTTCATCGACGGCCGCAAGCTGTCGAACGCGGCGCGCGACCATCTCGAACAGACTGCCCAGGTCGCCGAGCCCGCGGA
GCTGGCGCCCACGCTGCAGGCGCTGGCCGGCTCGGGCGCGTCGATCGCGCTCGACAGCGCCACCGCCGCCGATGCGCTGA
CCCGGCTGGTCAGGGATGCCGGCGGCAAGCCGCTGCGCGGCGCCGATCCGGTCGCGCTACTGAAGGCCGTCAAGAACGCC
ACCGAGATCGAAGGCACCAAGACCGCGCATCGCCGCGACGCCGTGGCGCTGGCGCGCTTCCTCGCCTTCATCGATCGCGA
GGCGCCGAACGGATCGCTGACCGAGATCGACGCCGTCGAGGCGCTGGAGAGCTTCCGCCGCGACACGGGCGCGCTCAAGG
ACGTCTCCTTCCCCACCATCTCCGGCACCGGCCCGAACGGCGCGATCGTGCATTATCGCGTCACCCGCAAGAGCAACCGC
CGCATCCAGCCCGGCGACCTGCTGCTGATCGATTCCGGCGCGCAATATCAGGACGGCACTACCGACGTCACCCGCACCAT
CGCGATCGGCGAGCCGACCGCCGAGATGTGCGACCGCTTCACCCGGGTGCTGCGCGGCCATATCGCCATCGCCCGCGCGG
TATTTCCCGACGGCACCACCGGCGCACAGCTCGACACACTGGCGCGGCAGTTCCTGTGGCAGGCCGGGATCGATTTCGAG
CACGGCACCGGCCACGGCGTCGGCAGCTATTTGTCGGTGCACGAAGGCCCGGCGCGGATCTCCAAGCTCGGCACAACGCC
CTTGAAGCGCGGCATGATCCTGTCCAACGAGCCCGGCTACTACAAGGCCGACGGCTTCGGCATCCGGATCGAGAATCTCG
AACTGGTTGTTGAGAAGTTGGTTGAAGGCGCCGAGAAGCCGATGAACGGATTCGAGACGCTGACGCTGGCGCCGATCGAT
CGCCGGTTGATCGACACGGACATGCTGAGCCGGAAGGAACTGGCCTGGCTGAACGCCTACCACGCCCGCGTCCGCGCCGA
AGTGAGGCCGCATCTCGACGGCCCGACCCAAGCCTGGCTCGACTCCGCGACCGCGCCGCTGGAGCGCTGA

Upstream 100 bases:

>100_bases
CCTGTCGCTTGCAGGCCTGATAAATCAAGCATAACTCGTGCCATAAGCAAAGCTTTTCGCGGGCGGCCGGCGCGTTCGCG
GACCATGAGGACCAGCAGCG

Downstream 100 bases:

>100_bases
TCGCCGTAATGTCACCGTCATTCCGGGATGCGCGCCGGCCGGCGCGCAGACCCGGAATCCAGAGGTTGTTGCGAAGAGAG
ATTCCGGGTTCGCGCTTCGC

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 609; Mature: 609

Protein sequence:

>609_residues
MFEAHFQTFEEPESGVALTARLAAFREEMVRRQLTGFVIPRADQQQNEYVPACDERLAWLTGFTGSAGMAVVLVHRAALF
VDGRYTLQAAQQVDGKAWTIESLVEPPPERWLEAHLKDGDRLGFDPWLHTSSAVERMQAACAKASAELVAVESNPVDGVW
TERPAPPLGQVSIHGLEFSGESEAAKLERIRGELTRLKADALVLSDSHAVAWTFNIRGADVSHTPLPLSYAVVPKDGRPT
IFIDGRKLSNAARDHLEQTAQVAEPAELAPTLQALAGSGASIALDSATAADALTRLVRDAGGKPLRGADPVALLKAVKNA
TEIEGTKTAHRRDAVALARFLAFIDREAPNGSLTEIDAVEALESFRRDTGALKDVSFPTISGTGPNGAIVHYRVTRKSNR
RIQPGDLLLIDSGAQYQDGTTDVTRTIAIGEPTAEMCDRFTRVLRGHIAIARAVFPDGTTGAQLDTLARQFLWQAGIDFE
HGTGHGVGSYLSVHEGPARISKLGTTPLKRGMILSNEPGYYKADGFGIRIENLELVVEKLVEGAEKPMNGFETLTLAPID
RRLIDTDMLSRKELAWLNAYHARVRAEVRPHLDGPTQAWLDSATAPLER

Sequences:

>Translated_609_residues
MFEAHFQTFEEPESGVALTARLAAFREEMVRRQLTGFVIPRADQQQNEYVPACDERLAWLTGFTGSAGMAVVLVHRAALF
VDGRYTLQAAQQVDGKAWTIESLVEPPPERWLEAHLKDGDRLGFDPWLHTSSAVERMQAACAKASAELVAVESNPVDGVW
TERPAPPLGQVSIHGLEFSGESEAAKLERIRGELTRLKADALVLSDSHAVAWTFNIRGADVSHTPLPLSYAVVPKDGRPT
IFIDGRKLSNAARDHLEQTAQVAEPAELAPTLQALAGSGASIALDSATAADALTRLVRDAGGKPLRGADPVALLKAVKNA
TEIEGTKTAHRRDAVALARFLAFIDREAPNGSLTEIDAVEALESFRRDTGALKDVSFPTISGTGPNGAIVHYRVTRKSNR
RIQPGDLLLIDSGAQYQDGTTDVTRTIAIGEPTAEMCDRFTRVLRGHIAIARAVFPDGTTGAQLDTLARQFLWQAGIDFE
HGTGHGVGSYLSVHEGPARISKLGTTPLKRGMILSNEPGYYKADGFGIRIENLELVVEKLVEGAEKPMNGFETLTLAPID
RRLIDTDMLSRKELAWLNAYHARVRAEVRPHLDGPTQAWLDSATAPLER
>Mature_609_residues
MFEAHFQTFEEPESGVALTARLAAFREEMVRRQLTGFVIPRADQQQNEYVPACDERLAWLTGFTGSAGMAVVLVHRAALF
VDGRYTLQAAQQVDGKAWTIESLVEPPPERWLEAHLKDGDRLGFDPWLHTSSAVERMQAACAKASAELVAVESNPVDGVW
TERPAPPLGQVSIHGLEFSGESEAAKLERIRGELTRLKADALVLSDSHAVAWTFNIRGADVSHTPLPLSYAVVPKDGRPT
IFIDGRKLSNAARDHLEQTAQVAEPAELAPTLQALAGSGASIALDSATAADALTRLVRDAGGKPLRGADPVALLKAVKNA
TEIEGTKTAHRRDAVALARFLAFIDREAPNGSLTEIDAVEALESFRRDTGALKDVSFPTISGTGPNGAIVHYRVTRKSNR
RIQPGDLLLIDSGAQYQDGTTDVTRTIAIGEPTAEMCDRFTRVLRGHIAIARAVFPDGTTGAQLDTLARQFLWQAGIDFE
HGTGHGVGSYLSVHEGPARISKLGTTPLKRGMILSNEPGYYKADGFGIRIENLELVVEKLVEGAEKPMNGFETLTLAPID
RRLIDTDMLSRKELAWLNAYHARVRAEVRPHLDGPTQAWLDSATAPLER

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Homo sapiens, GI264681563, Length=614, Percent_Identity=40.3908794788274, Blast_Score=432, Evalue=1e-121,
Organism=Homo sapiens, GI264681565, Length=614, Percent_Identity=38.7622149837134, Blast_Score=399, Evalue=1e-111,
Organism=Homo sapiens, GI93141226, Length=618, Percent_Identity=34.9514563106796, Blast_Score=374, Evalue=1e-103,
Organism=Escherichia coli, GI1788728, Length=234, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17509539, Length=594, Percent_Identity=35.5218855218855, Blast_Score=350, Evalue=2e-96,
Organism=Caenorhabditis elegans, GI25149105, Length=623, Percent_Identity=28.5714285714286, Blast_Score=265, Evalue=8e-71,
Organism=Saccharomyces cerevisiae, GI6322999, Length=655, Percent_Identity=32.5190839694656, Blast_Score=322, Evalue=1e-88,
Organism=Drosophila melanogaster, GI17137632, Length=611, Percent_Identity=35.3518821603928, Blast_Score=345, Evalue=4e-95,
Organism=Drosophila melanogaster, GI161078230, Length=595, Percent_Identity=32.1008403361345, Blast_Score=286, Evalue=4e-77,
Organism=Drosophila melanogaster, GI21357287, Length=595, Percent_Identity=32.1008403361345, Blast_Score=286, Evalue=4e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR001714
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 66150; Mature: 66150

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEAHFQTFEEPESGVALTARLAAFREEMVRRQLTGFVIPRADQQQNEYVPACDERLAWL
CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCCCHHHHHHHH
TGFTGSAGMAVVLVHRAALFVDGRYTLQAAQQVDGKAWTIESLVEPPPERWLEAHLKDGD
CCCCCCCCHHHHHHHHHHHEECCCHHHHHHHHCCCCEEEHHHHHCCCHHHHHHHHHCCCC
RLGFDPWLHTSSAVERMQAACAKASAELVAVESNPVDGVWTERPAPPLGQVSIHGLEFSG
CCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECC
ESEAAKLERIRGELTRLKADALVLSDSHAVAWTFNIRGADVSHTPLPLSYAVVPKDGRPT
CHHHHHHHHHHHHHHHHHHCEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCE
IFIDGRKLSNAARDHLEQTAQVAEPAELAPTLQALAGSGASIALDSATAADALTRLVRDA
EEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHC
GGKPLRGADPVALLKAVKNATEIEGTKTAHRRDAVALARFLAFIDREAPNGSLTEIDAVE
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ALESFRRDTGALKDVSFPTISGTGPNGAIVHYRVTRKSNRRIQPGDLLLIDSGAQYQDGT
HHHHHHHHCCCCCCCCCCEECCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCCC
TDVTRTIAIGEPTAEMCDRFTRVLRGHIAIARAVFPDGTTGAQLDTLARQFLWQAGIDFE
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCCC
HGTGHGVGSYLSVHEGPARISKLGTTPLKRGMILSNEPGYYKADGFGIRIENLELVVEKL
CCCCCCCCCCEEECCCHHHHHHCCCCHHHCCEEECCCCCEEECCCEEEEEHHHHHHHHHH
VEGAEKPMNGFETLTLAPIDRRLIDTDMLSRKELAWLNAYHARVRAEVRPHLDGPTQAWL
HHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
DSATAPLER
CCCCCCCCC
>Mature Secondary Structure
MFEAHFQTFEEPESGVALTARLAAFREEMVRRQLTGFVIPRADQQQNEYVPACDERLAWL
CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCCCHHHHHHHH
TGFTGSAGMAVVLVHRAALFVDGRYTLQAAQQVDGKAWTIESLVEPPPERWLEAHLKDGD
CCCCCCCCHHHHHHHHHHHEECCCHHHHHHHHCCCCEEEHHHHHCCCHHHHHHHHHCCCC
RLGFDPWLHTSSAVERMQAACAKASAELVAVESNPVDGVWTERPAPPLGQVSIHGLEFSG
CCCCCHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECC
ESEAAKLERIRGELTRLKADALVLSDSHAVAWTFNIRGADVSHTPLPLSYAVVPKDGRPT
CHHHHHHHHHHHHHHHHHHCEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCE
IFIDGRKLSNAARDHLEQTAQVAEPAELAPTLQALAGSGASIALDSATAADALTRLVRDA
EEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHC
GGKPLRGADPVALLKAVKNATEIEGTKTAHRRDAVALARFLAFIDREAPNGSLTEIDAVE
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
ALESFRRDTGALKDVSFPTISGTGPNGAIVHYRVTRKSNRRIQPGDLLLIDSGAQYQDGT
HHHHHHHHCCCCCCCCCCEECCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCCC
TDVTRTIAIGEPTAEMCDRFTRVLRGHIAIARAVFPDGTTGAQLDTLARQFLWQAGIDFE
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCCC
HGTGHGVGSYLSVHEGPARISKLGTTPLKRGMILSNEPGYYKADGFGIRIENLELVVEKL
CCCCCCCCCCEEECCCHHHHHHCCCCHHHCCEEECCCCCEEECCCEEEEEHHHHHHHHHH
VEGAEKPMNGFETLTLAPIDRRLIDTDMLSRKELAWLNAYHARVRAEVRPHLDGPTQAWL
HHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
DSATAPLER
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]