Definition | Rhodopseudomonas palustris HaA2, complete genome. |
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Accession | NC_007778 |
Length | 5,331,656 |
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The map label for this gene is 86749082
Identifier: 86749082
GI number: 86749082
Start: 2225850
End: 2227340
Strand: Direct
Name: 86749082
Synonym: RPB_1959
Alternate gene names: NA
Gene position: 2225850-2227340 (Clockwise)
Preceding gene: 86749075
Following gene: 86749085
Centisome position: 41.75
GC content: 71.23
Gene sequence:
>1491_bases ATGACGATCCTCACCGCCGATTCGAGCGACCTCGCCGGCGCACGGCACAGCGCCGCGCTGCCGCTGTGGATCGGGGTCGC GGTCTACGCCTTCCTGCTGGTCTCCGGCGACCGGCTGCTGAACGATCCCGATACGCTGTGGCAGGTCACGCTGGGGCAGT GGATCATCGACCATCGCGCGGTGCCGCAGGTCGACGTCTATTCCTTCACCATGGCCGGGCAGCCGTGGATCTCGACGCAA TGGCTGTCGCAGGTGCTACTGGCGGCGAGCTACCAACTCGCCGGCTGGGCCGGGCCGGTGGTGCTGTCGGCCGCGGCGCT GGCGGCGACCTTCATGCTTTATGCGCGCTGGCTCGGCCAGCGGCTGCGCGGCAGTACCGCGCTGGTGTTCGTCGCCGCGG CGGTGGCGCTGATGGCGCCGCATATGCTGGCGCGGCCGCACGTGCTGGCGATGCCGGTGATGGTGGCATGGGTCGGCGCG CTGATGGCGGCCGCCGATCGCCGCGCCGCGCCGTCGTTCTGGCTGCTGCCGCTGATGGTGCTGTGGGCCAATCTGCACGG CGGCTTCGTGCTCGGCATCGCGCTGGTGGCGCCGATCGCGCTCGACGCGGTGCTGGCGGCGGCGCCGTCGCGCCGCGTTT CGCTGCTGCTGCGCTGGGGTGCGTTCGGCGTCGCCGCGCTGATCGTGAGCTGCGCCAATCCGTACGGCTGGAACGCGATC CTGGCGTCGCAGCGCATCCTGTCGCTCGGCGCGGCGCTGGCGACGATCGGCGAATGGGCGCCGGTGAATTTCTCGCGGGT CGGGGCGTTCGAGGTTGCGCTGCTGGGAGGTCTCGGCCTCGCTTTGTGGCGCGGCGTGACGCTGCCGCCGGTGCGCATCC TGCTGCTGCTCGGCCTCGTGCACATGGCGCTGAGCGCCAACCGCAACATCGAAGTGCTGGCGCTGCTCGCGCCGCTGATC ATCGCGGCGCCGCTGGCCCGGCAGATCGGCGGCGCCGAAGCGCGCGGCGAGGCGCCGGCGCGCCTCTCGGTCGGCGCGGT GGCCGCGGCGATCGCGCTCACGCTCGGCGGCACGCTGGCGTTCGCCTCGCTGCATCGCTTCGCGCCGCATCCGGCGAATT CGCCGGCGGCGGCGGTGGCCGAGCTGAAGACGCTCGGCGTGCAGCGGGTGTTCAACGATTACGATTTCGGCGGCTACCTG ATCGCCAACGGCGTCGCGCCGTTCATCGACGGCCGCACCGAACTGTACGGCGAGGCCTTCGTGGTCGAACAGAATTCCGC GGTGCGGCTGAAGCCGCCGGAGAAACTGTTCCGACTGCTCGCGGACTACGACATCGACGCCACGCTGCTCCGCACCGAGG ACGCGGCCACCCATCTGCTCGATCACATCGACGGCTGGCAGAAGGTGTATTCCGACGACGTCGCGACCATCCATTTGCGC CGGCCGGGCGCGCTGCACGGCGCCGCGCCGAAGGTCACGCCCGCGAACTGA
Upstream 100 bases:
>100_bases GGGAGCTTGTTCCATCGGCCCGACAGCGCGGCCGGTTTACTTCAAATTATCCGGCCGCGTGTTTGATCGGCGTAGCTTCA GCCACGACCGGACACCGCCG
Downstream 100 bases:
>100_bases TCGGGACGCCGGCTCACGCGGCGCCGCTGTCCTGCTGCTGTCCGGGGAGGTCGAGCCGCACGATCAGGCCGTGCGGCTTG CGGTCGCGCAGCGTCAGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 496; Mature: 495
Protein sequence:
>496_residues MTILTADSSDLAGARHSAALPLWIGVAVYAFLLVSGDRLLNDPDTLWQVTLGQWIIDHRAVPQVDVYSFTMAGQPWISTQ WLSQVLLAASYQLAGWAGPVVLSAAALAATFMLYARWLGQRLRGSTALVFVAAAVALMAPHMLARPHVLAMPVMVAWVGA LMAAADRRAAPSFWLLPLMVLWANLHGGFVLGIALVAPIALDAVLAAAPSRRVSLLLRWGAFGVAALIVSCANPYGWNAI LASQRILSLGAALATIGEWAPVNFSRVGAFEVALLGGLGLALWRGVTLPPVRILLLLGLVHMALSANRNIEVLALLAPLI IAAPLARQIGGAEARGEAPARLSVGAVAAAIALTLGGTLAFASLHRFAPHPANSPAAAVAELKTLGVQRVFNDYDFGGYL IANGVAPFIDGRTELYGEAFVVEQNSAVRLKPPEKLFRLLADYDIDATLLRTEDAATHLLDHIDGWQKVYSDDVATIHLR RPGALHGAAPKVTPAN
Sequences:
>Translated_496_residues MTILTADSSDLAGARHSAALPLWIGVAVYAFLLVSGDRLLNDPDTLWQVTLGQWIIDHRAVPQVDVYSFTMAGQPWISTQ WLSQVLLAASYQLAGWAGPVVLSAAALAATFMLYARWLGQRLRGSTALVFVAAAVALMAPHMLARPHVLAMPVMVAWVGA LMAAADRRAAPSFWLLPLMVLWANLHGGFVLGIALVAPIALDAVLAAAPSRRVSLLLRWGAFGVAALIVSCANPYGWNAI LASQRILSLGAALATIGEWAPVNFSRVGAFEVALLGGLGLALWRGVTLPPVRILLLLGLVHMALSANRNIEVLALLAPLI IAAPLARQIGGAEARGEAPARLSVGAVAAAIALTLGGTLAFASLHRFAPHPANSPAAAVAELKTLGVQRVFNDYDFGGYL IANGVAPFIDGRTELYGEAFVVEQNSAVRLKPPEKLFRLLADYDIDATLLRTEDAATHLLDHIDGWQKVYSDDVATIHLR RPGALHGAAPKVTPAN >Mature_495_residues TILTADSSDLAGARHSAALPLWIGVAVYAFLLVSGDRLLNDPDTLWQVTLGQWIIDHRAVPQVDVYSFTMAGQPWISTQW LSQVLLAASYQLAGWAGPVVLSAAALAATFMLYARWLGQRLRGSTALVFVAAAVALMAPHMLARPHVLAMPVMVAWVGAL MAAADRRAAPSFWLLPLMVLWANLHGGFVLGIALVAPIALDAVLAAAPSRRVSLLLRWGAFGVAALIVSCANPYGWNAIL ASQRILSLGAALATIGEWAPVNFSRVGAFEVALLGGLGLALWRGVTLPPVRILLLLGLVHMALSANRNIEVLALLAPLII AAPLARQIGGAEARGEAPARLSVGAVAAAIALTLGGTLAFASLHRFAPHPANSPAAAVAELKTLGVQRVFNDYDFGGYLI ANGVAPFIDGRTELYGEAFVVEQNSAVRLKPPEKLFRLLADYDIDATLLRTEDAATHLLDHIDGWQKVYSDDVATIHLRR PGALHGAAPKVTPAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52503; Mature: 52372
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTILTADSSDLAGARHSAALPLWIGVAVYAFLLVSGDRLLNDPDTLWQVTLGQWIIDHRA CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHCCC VPQVDVYSFTMAGQPWISTQWLSQVLLAASYQLAGWAGPVVLSAAALAATFMLYARWLGQ CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH RLRGSTALVFVAAAVALMAPHMLARPHVLAMPVMVAWVGALMAAADRRAAPSFWLLPLMV HHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LWANLHGGFVLGIALVAPIALDAVLAAAPSRRVSLLLRWGAFGVAALIVSCANPYGWNAI HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH LASQRILSLGAALATIGEWAPVNFSRVGAFEVALLGGLGLALWRGVTLPPVRILLLLGLV HHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH HMALSANRNIEVLALLAPLIIAAPLARQIGGAEARGEAPARLSVGAVAAAIALTLGGTLA HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FASLHRFAPHPANSPAAAVAELKTLGVQRVFNDYDFGGYLIANGVAPFIDGRTELYGEAF HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHCCCHHHCCCEE VVEQNSAVRLKPPEKLFRLLADYDIDATLLRTEDAATHLLDHIDGWQKVYSDDVATIHLR EEECCCEEEECCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEE RPGALHGAAPKVTPAN CCCCCCCCCCCCCCCC >Mature Secondary Structure TILTADSSDLAGARHSAALPLWIGVAVYAFLLVSGDRLLNDPDTLWQVTLGQWIIDHRA EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHCCC VPQVDVYSFTMAGQPWISTQWLSQVLLAASYQLAGWAGPVVLSAAALAATFMLYARWLGQ CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH RLRGSTALVFVAAAVALMAPHMLARPHVLAMPVMVAWVGALMAAADRRAAPSFWLLPLMV HHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LWANLHGGFVLGIALVAPIALDAVLAAAPSRRVSLLLRWGAFGVAALIVSCANPYGWNAI HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH LASQRILSLGAALATIGEWAPVNFSRVGAFEVALLGGLGLALWRGVTLPPVRILLLLGLV HHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH HMALSANRNIEVLALLAPLIIAAPLARQIGGAEARGEAPARLSVGAVAAAIALTLGGTLA HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FASLHRFAPHPANSPAAAVAELKTLGVQRVFNDYDFGGYLIANGVAPFIDGRTELYGEAF HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHCCCHHHCCCEE VVEQNSAVRLKPPEKLFRLLADYDIDATLLRTEDAATHLLDHIDGWQKVYSDDVATIHLR EEECCCEEEECCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEE RPGALHGAAPKVTPAN CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA