Click here to switch to the map view.

The map label for this gene is yafM [C]

Identifier: 86749075

GI number: 86749075

Start: 2217955

End: 2218491

Strand: Direct

Name: yafM [C]

Synonym: RPB_1952

Alternate gene names: 86749075

Gene position: 2217955-2218491 (Clockwise)

Preceding gene: 86749074

Following gene: 86749082

Centisome position: 41.6

GC content: 63.13

Gene sequence:

>537_bases
ATGACGAATTATCGGCGTAACGCCATCGCCGGCGGCCGCTTCTTCTTCACCGTCAATCTCGCGGAGCGCCGGCTGCGGTT
GCTGACCGATCACATCGATCTGTTGCGCGCTGCCTTTCGCGAGACGCGGCAGCGCCATCCGTTCGTGATCGATGCGATCG
TGGTGTTGCCCGACCACCTTCATGCGGTCTGGACGCTCCCCGATGGCGATCGCGATTTCGCCGCGCGCTGGCGGCTGATC
AAGGCTGCGTTCTCACGCGGCCTACCGACGGGCGAACGGATTTCCGAAAGCCGCGCGCGCAAAGCCGAACGCGGCATCTG
GCAGCGGCGCTATTGGGAGCATACGCTTCGCGACGACGACGATCTCGCGAGGCATATCGACTACATTCATTTCAACCCTG
TGAAACATGGCCACGTCGCCCGCGTCGCGGACTGGCCGCATTCCTCGTTTCATCGTATGGTCGCGCGCGGCGTCTATTCG
ATCGATTGGGCTGGCGACATGGACGCCCCAAGCGACGCGTTCGGCGAACGATCGTGA

Upstream 100 bases:

>100_bases
GCCAAGCGATATGCGGGTTCTGAGGTCACCAGCTACGCGAGCCATCGTGTAGGATGGGTTGAGCTCTTGCGAAACCCATC
GCCGCACCACGGGCCTTTCG

Downstream 100 bases:

>100_bases
AGCGCCGTAGGATGGGTTGAGCCCTTCGCGAAAACCATCATGATGTGCAGCGATCGGGGCGATGGGTTTCGCAAGAGCTC
AACCCATCCTACGGGCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MTNYRRNAIAGGRFFFTVNLAERRLRLLTDHIDLLRAAFRETRQRHPFVIDAIVVLPDHLHAVWTLPDGDRDFAARWRLI
KAAFSRGLPTGERISESRARKAERGIWQRRYWEHTLRDDDDLARHIDYIHFNPVKHGHVARVADWPHSSFHRMVARGVYS
IDWAGDMDAPSDAFGERS

Sequences:

>Translated_178_residues
MTNYRRNAIAGGRFFFTVNLAERRLRLLTDHIDLLRAAFRETRQRHPFVIDAIVVLPDHLHAVWTLPDGDRDFAARWRLI
KAAFSRGLPTGERISESRARKAERGIWQRRYWEHTLRDDDDLARHIDYIHFNPVKHGHVARVADWPHSSFHRMVARGVYS
IDWAGDMDAPSDAFGERS
>Mature_177_residues
TNYRRNAIAGGRFFFTVNLAERRLRLLTDHIDLLRAAFRETRQRHPFVIDAIVVLPDHLHAVWTLPDGDRDFAARWRLIK
AAFSRGLPTGERISESRARKAERGIWQRRYWEHTLRDDDDLARHIDYIHFNPVKHGHVARVADWPHSSFHRMVARGVYSI
DWAGDMDAPSDAFGERS

Specific function: Unknown

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yafM [H]

Homologues:

Organism=Escherichia coli, GI1786422, Length=167, Percent_Identity=50.2994011976048, Blast_Score=176, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 20851; Mature: 20720

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNYRRNAIAGGRFFFTVNLAERRLRLLTDHIDLLRAAFRETRQRHPFVIDAIVVLPDHL
CCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCCCC
HAVWTLPDGDRDFAARWRLIKAAFSRGLPTGERISESRARKAERGIWQRRYWEHTLRDDD
EEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
DLARHIDYIHFNPVKHGHVARVADWPHSSFHRMVARGVYSIDWAGDMDAPSDAFGERS
HHHHHHCCCEECCCCCCCEEEECCCCCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TNYRRNAIAGGRFFFTVNLAERRLRLLTDHIDLLRAAFRETRQRHPFVIDAIVVLPDHL
CCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCCCC
HAVWTLPDGDRDFAARWRLIKAAFSRGLPTGERISESRARKAERGIWQRRYWEHTLRDDD
EEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
DLARHIDYIHFNPVKHGHVARVADWPHSSFHRMVARGVYSIDWAGDMDAPSDAFGERS
HHHHHHCCCEECCCCCCCEEEECCCCCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]