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The map label for this gene is 86749060

Identifier: 86749060

GI number: 86749060

Start: 2205910

End: 2206569

Strand: Reverse

Name: 86749060

Synonym: RPB_1937

Alternate gene names: NA

Gene position: 2206569-2205910 (Counterclockwise)

Preceding gene: 86749061

Following gene: 86749058

Centisome position: 41.39

GC content: 72.88

Gene sequence:

>660_bases
TTGGGGGCGCGTGTGGCCGATACAGAAGTAACCCGCCGTGGACGTCCGGGACCGCAAGGACCGCGTGGACGTCCGGGCGA
ACCGGGACGTCCCGGACCGCAGGGACATCCGGGACGGCCGGGACCGGAAGGCCCGCGCGGCAAGCCGGGGCCGGTCGGCA
AACCCGGTCCGCAAGGCAAGGCCGGCCCGCAGGGCAAGCCCGGCGCCGACGGCAAACCGGGCCCGCAGGGCCCGCAGGGC
CCGCAAGGCAAGCCCGGCCCCGACGGCAAGGCTGGTCCAGTTGGGCCCGAAGGCAAGCCGGGACCGCAGGGTCCCCGCGG
CGACCAGGGCCCCCGTGGCGAACAGGGACTGCGCGGCGATCAGGGCCCGCGCGGCGAGCCCGGCCCTGCCGGCGCCCTCC
CCTCGATCGAGCAGGTGATGCCCTGGCTGCACCTGATCTTCGACGCCTATGAGGACTACAAGGCGAAGCGCGAACAGGAG
GCGCGCGAACGCGCCGAGCGCGAGGCCACGGAGCTGCGCGAAGCGATCGAACGCGAAGCCGCCGAGCGCGAGGTCGCAGC
TGCGCTCGACGAGTCGGAGCACGCCGACGACGATGAACGCGACGACGACGACGAGCGGCCCGACGGCAAGAAAAAGAAGA
AGCGCAAGCACAAGGATTGA

Upstream 100 bases:

>100_bases
CGTTTCGCGGATTGCTCAATCTGCCGGTCGTCTGGAACAGCGCAGCGCCGAATTGAAGCCGTCACCTCACCTCTGCTAAA
GGTGGGGGGATAGGAATCGT

Downstream 100 bases:

>100_bases
GTGAAGCCGCGCGCGCTAACCGAATCGCGCGCGCGAGCGCTCTCTTGCCTTCTCTGCCTCGACGTCCCGGTTGCGCGGCT
CGGCCTGCGTCTGCAGCGAC

Product: triple helix repeat-containing collagen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MGARVADTEVTRRGRPGPQGPRGRPGEPGRPGPQGHPGRPGPEGPRGKPGPVGKPGPQGKAGPQGKPGADGKPGPQGPQG
PQGKPGPDGKAGPVGPEGKPGPQGPRGDQGPRGEQGLRGDQGPRGEPGPAGALPSIEQVMPWLHLIFDAYEDYKAKREQE
ARERAEREATELREAIEREAAEREVAAALDESEHADDDERDDDDERPDGKKKKKRKHKD

Sequences:

>Translated_219_residues
MGARVADTEVTRRGRPGPQGPRGRPGEPGRPGPQGHPGRPGPEGPRGKPGPVGKPGPQGKAGPQGKPGADGKPGPQGPQG
PQGKPGPDGKAGPVGPEGKPGPQGPRGDQGPRGEQGLRGDQGPRGEPGPAGALPSIEQVMPWLHLIFDAYEDYKAKREQE
ARERAEREATELREAIEREAAEREVAAALDESEHADDDERDDDDERPDGKKKKKRKHKD
>Mature_218_residues
GARVADTEVTRRGRPGPQGPRGRPGEPGRPGPQGHPGRPGPEGPRGKPGPVGKPGPQGKAGPQGKPGADGKPGPQGPQGP
QGKPGPDGKAGPVGPEGKPGPQGPRGDQGPRGEQGLRGDQGPRGEPGPAGALPSIEQVMPWLHLIFDAYEDYKAKREQEA
RERAEREATELREAIEREAAEREVAAALDESEHADDDERDDDDERPDGKKKKKRKHKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI183583553, Length=133, Percent_Identity=42.8571428571429, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI65301115, Length=249, Percent_Identity=29.718875502008, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI56847616, Length=213, Percent_Identity=30.9859154929577, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI115527062, Length=114, Percent_Identity=47.3684210526316, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI115527066, Length=114, Percent_Identity=47.3684210526316, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI115527070, Length=114, Percent_Identity=47.3684210526316, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI5803080, Length=114, Percent_Identity=46.4912280701754, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI115392133, Length=116, Percent_Identity=49.1379310344828, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI61699226, Length=126, Percent_Identity=51.5873015873016, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI48762934, Length=108, Percent_Identity=54.6296296296296, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI32140760, Length=159, Percent_Identity=39.622641509434, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI18780273, Length=126, Percent_Identity=41.2698412698413, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI89363017, Length=121, Percent_Identity=49.5867768595041, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI11386161, Length=119, Percent_Identity=51.2605042016807, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI111118976, Length=112, Percent_Identity=51.7857142857143, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI110735435, Length=147, Percent_Identity=44.2176870748299, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI98985806, Length=100, Percent_Identity=49, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI98985810, Length=100, Percent_Identity=49, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI119829187, Length=93, Percent_Identity=49.4623655913978, Blast_Score=64, Evalue=1e-10,
Organism=Homo sapiens, GI73486666, Length=139, Percent_Identity=46.0431654676259, Blast_Score=64, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17569903, Length=121, Percent_Identity=46.2809917355372, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17535735, Length=156, Percent_Identity=42.3076923076923, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17507107, Length=134, Percent_Identity=46.2686567164179, Blast_Score=73, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17506747, Length=95, Percent_Identity=52.6315789473684, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193203538, Length=150, Percent_Identity=44.6666666666667, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17551704, Length=110, Percent_Identity=49.0909090909091, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17566918, Length=122, Percent_Identity=47.5409836065574, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI45549584, Length=111, Percent_Identity=51.3513513513513, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI221379525, Length=116, Percent_Identity=47.4137931034483, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI221379533, Length=159, Percent_Identity=40.251572327044, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23089; Mature: 22957

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGARVADTEVTRRGRPGPQGPRGRPGEPGRPGPQGHPGRPGPEGPRGKPGPVGKPGPQGK
CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AGPQGKPGADGKPGPQGPQGPQGKPGPDGKAGPVGPEGKPGPQGPRGDQGPRGEQGLRGD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QGPRGEPGPAGALPSIEQVMPWLHLIFDAYEDYKAKREQEARERAEREATELREAIEREA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEREVAAALDESEHADDDERDDDDERPDGKKKKKRKHKD
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCC
>Mature Secondary Structure 
GARVADTEVTRRGRPGPQGPRGRPGEPGRPGPQGHPGRPGPEGPRGKPGPVGKPGPQGK
CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AGPQGKPGADGKPGPQGPQGPQGKPGPDGKAGPVGPEGKPGPQGPRGDQGPRGEQGLRGD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QGPRGEPGPAGALPSIEQVMPWLHLIFDAYEDYKAKREQEARERAEREATELREAIEREA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEREVAAALDESEHADDDERDDDDERPDGKKKKKRKHKD
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA