| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is vanA [H]
Identifier: 86749031
GI number: 86749031
Start: 2180781
End: 2181824
Strand: Reverse
Name: vanA [H]
Synonym: RPB_1908
Alternate gene names: 86749031
Gene position: 2181824-2180781 (Counterclockwise)
Preceding gene: 86749033
Following gene: 86749030
Centisome position: 40.92
GC content: 66.76
Gene sequence:
>1044_bases ATGCCCGCCTTTCCGCTCAACGCCTGGTACGCCGCAGCGTGGGACGCCGACATCAAGCACGCGTTGTTTCCGCGCACGAT CTGCAACAAGCACGTGGTGATGTATCGCAAGGCCGACGGTAGCGTCGCCGCGCTCGAGGACGCCTGCTGGCACCGGCTGG TGCCGTTGTCGAAGGGCCGGCTCGAAGGCGACACCGTCGTCTGCGGCTATCACGGGCTGAAATTCAGTCCGCAGGGCCGC TGCACCTACATGCCGTCGCAGGAGACGATCAATCCGTCGGCCTGCGTGCGCAGCTACCCGGTGGTCGAGCGGCATCGCTT CGTCTGGCTGTGGATGGGCGATCCGGCGCTGGCCGATCCGGCACTCGTGCCGGACATGCACTGGAACGACGACCCGGCCT GGGCCGGCGACGGCAAGACCATCCACGCCAGATGCGACTGGCGGCTGGTGGTCGACAATCTGATGGACCTCACCCACGAG ACCTACGTCCACGGCTCGTCGATCGGCAACGAAGCCGTCGCCGAAGCGCCGTTCGACGTCACCCATGGCGACCGCACCGT CACCGTGACGCGGTGGATGCGCGGCATCGAGGCGCCGCCGTTCTGGGCGGCGCAGCTGCGCAAGCCGGGTCCGGTCGATC GCTGGCAGATCATCCGGTTCGAGGCGCCCGGCACCGTGACGATCGACGTTGGGGTCGCGCCCGCCGGCAGCGGGGCGCCG GAAGGCGACCGCTCGCAGGGCGTCAACGGCTTCGTACTCAACACCATGACGCCGGAGACCGACACGACCTGCCACTACTT CTGGGCGTTCGTGCGCAACTATCGGCTCGGCGACCAGCGCCTCACCACTGAAATTCGCGAAGGCGTGTCGGGTATCTTCG GCGAGGACGAGATCATTCTCGAAGCTCAGCAGCGCGCCATCAGCGAAAACCCGGACCGCGTGTTCTACAATCTCAATATC GATGCCGGCGCGATGTGGTCGCGCAAGCTGATCGACCGCATGGTCGCGAAGGAAGCCGCGCCGCGGCTGCAAGCGGCGGA GTAA
Upstream 100 bases:
>100_bases CCAGCTTAGGATCTCATGATGCAGATTTTTGAAATTCTATTGCATGTGACCTCTTAATGTATACAGTCTGAACCCAATGA TAATCTTCAGGGAGGCCACG
Downstream 100 bases:
>100_bases GCGATGAACGAGAAGATCGCCGACCGCTCAATGTCGCAGACGGTGCGGGCGCAGCTCGCGCTGCGCGACATGGTGCTGTC CGGCCAGCTCCGCGCCGGCG
Product: Rieske (2Fe-2S) protein
Products: NA
Alternate protein names: 4-hydroxy-3-methoxybenzoate demethylase [H]
Number of amino acids: Translated: 347; Mature: 346
Protein sequence:
>347_residues MPAFPLNAWYAAAWDADIKHALFPRTICNKHVVMYRKADGSVAALEDACWHRLVPLSKGRLEGDTVVCGYHGLKFSPQGR CTYMPSQETINPSACVRSYPVVERHRFVWLWMGDPALADPALVPDMHWNDDPAWAGDGKTIHARCDWRLVVDNLMDLTHE TYVHGSSIGNEAVAEAPFDVTHGDRTVTVTRWMRGIEAPPFWAAQLRKPGPVDRWQIIRFEAPGTVTIDVGVAPAGSGAP EGDRSQGVNGFVLNTMTPETDTTCHYFWAFVRNYRLGDQRLTTEIREGVSGIFGEDEIILEAQQRAISENPDRVFYNLNI DAGAMWSRKLIDRMVAKEAAPRLQAAE
Sequences:
>Translated_347_residues MPAFPLNAWYAAAWDADIKHALFPRTICNKHVVMYRKADGSVAALEDACWHRLVPLSKGRLEGDTVVCGYHGLKFSPQGR CTYMPSQETINPSACVRSYPVVERHRFVWLWMGDPALADPALVPDMHWNDDPAWAGDGKTIHARCDWRLVVDNLMDLTHE TYVHGSSIGNEAVAEAPFDVTHGDRTVTVTRWMRGIEAPPFWAAQLRKPGPVDRWQIIRFEAPGTVTIDVGVAPAGSGAP EGDRSQGVNGFVLNTMTPETDTTCHYFWAFVRNYRLGDQRLTTEIREGVSGIFGEDEIILEAQQRAISENPDRVFYNLNI DAGAMWSRKLIDRMVAKEAAPRLQAAE >Mature_346_residues PAFPLNAWYAAAWDADIKHALFPRTICNKHVVMYRKADGSVAALEDACWHRLVPLSKGRLEGDTVVCGYHGLKFSPQGRC TYMPSQETINPSACVRSYPVVERHRFVWLWMGDPALADPALVPDMHWNDDPAWAGDGKTIHARCDWRLVVDNLMDLTHET YVHGSSIGNEAVAEAPFDVTHGDRTVTVTRWMRGIEAPPFWAAQLRKPGPVDRWQIIRFEAPGTVTIDVGVAPAGSGAPE GDRSQGVNGFVLNTMTPETDTTCHYFWAFVRNYRLGDQRLTTEIREGVSGIFGEDEIILEAQQRAISENPDRVFYNLNID AGAMWSRKLIDRMVAKEAAPRLQAAE
Specific function: Unknown
COG id: COG4638
COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Rieske domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017941 - InterPro: IPR015881 [H]
Pfam domain/function: PF00355 Rieske [H]
EC number: =1.14.13.82 [H]
Molecular weight: Translated: 38818; Mature: 38687
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAFPLNAWYAAAWDADIKHALFPRTICNKHVVMYRKADGSVAALEDACWHRLVPLSKGR CCCCCCCCEEEEECCCCHHHHHCCHHHHCCEEEEEEECCCCEEHHHHHHHHHCCCCCCCC LEGDTVVCGYHGLKFSPQGRCTYMPSQETINPSACVRSYPVVERHRFVWLWMGDPALADP CCCCEEEEECCCCEECCCCCEEECCCCCCCCHHHHHHCCCCEECCEEEEEEECCCCCCCC ALVPDMHWNDDPAWAGDGKTIHARCDWRLVVDNLMDLTHETYVHGSSIGNEAVAEAPFDV CCCCCCCCCCCCCCCCCCCEEEEEECEEEEHHHHHHHHHHHEECCCCCCCCHHHCCCCEE THGDRTVTVTRWMRGIEAPPFWAAQLRKPGPVDRWQIIRFEAPGTVTIDVGVAPAGSGAP CCCCEEEEHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCC EGDRSQGVNGFVLNTMTPETDTTCHYFWAFVRNYRLGDQRLTTEIREGVSGIFGEDEIIL CCCHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEE EAQQRAISENPDRVFYNLNIDAGAMWSRKLIDRMVAKEAAPRLQAAE HHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure PAFPLNAWYAAAWDADIKHALFPRTICNKHVVMYRKADGSVAALEDACWHRLVPLSKGR CCCCCCCEEEEECCCCHHHHHCCHHHHCCEEEEEEECCCCEEHHHHHHHHHCCCCCCCC LEGDTVVCGYHGLKFSPQGRCTYMPSQETINPSACVRSYPVVERHRFVWLWMGDPALADP CCCCEEEEECCCCEECCCCCEEECCCCCCCCHHHHHHCCCCEECCEEEEEEECCCCCCCC ALVPDMHWNDDPAWAGDGKTIHARCDWRLVVDNLMDLTHETYVHGSSIGNEAVAEAPFDV CCCCCCCCCCCCCCCCCCCEEEEEECEEEEHHHHHHHHHHHEECCCCCCCCHHHCCCCEE THGDRTVTVTRWMRGIEAPPFWAAQLRKPGPVDRWQIIRFEAPGTVTIDVGVAPAGSGAP CCCCEEEEHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCC EGDRSQGVNGFVLNTMTPETDTTCHYFWAFVRNYRLGDQRLTTEIREGVSGIFGEDEIIL CCCHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEE EAQQRAISENPDRVFYNLNIDAGAMWSRKLIDRMVAKEAAPRLQAAE HHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3170489 [H]