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The map label for this gene is ydhC [H]

Identifier: 86749030

GI number: 86749030

Start: 2180022

End: 2180777

Strand: Reverse

Name: ydhC [H]

Synonym: RPB_1907

Alternate gene names: 86749030

Gene position: 2180777-2180022 (Counterclockwise)

Preceding gene: 86749031

Following gene: 86749029

Centisome position: 40.9

GC content: 68.52

Gene sequence:

>756_bases
ATGAACGAGAAGATCGCCGACCGCTCAATGTCGCAGACGGTGCGGGCGCAGCTCGCGCTGCGCGACATGGTGCTGTCCGG
CCAGCTCCGCGCCGGCGAGCGGATTTCCGAATTACAGGCGGTCGATATCACCGGCGTGTCGCGCACCCCGGTGCGGATGG
CGCTGGTGCGGCTCGAGGACGAAGGCCTGCTGCAGGCGATCCCGTCCGGCGGCTTCATGGTGAAGGCGTTTTCCGAGCGC
GACATTCTCGACTCGATCGAGCTGCGCGGCACGATGGAGGGCCTCGCTGCACGGCTCGCCGCCGAGCGCGGCGTCAGCGC
CCGACAACTCGAACCGCTGAAGGAGTGCCTCGGCGACATCGATCAGCTGGTGCAACAGGATCCGGTCTCGGTCGACGCGT
TCTCGTCCTACGTCGCGCTCAACGCCCGATTCCACGCGCTGCTCAACGAATTGTCCGGCTCGTCGCCGGTGATGCGGCAG
ATCGACCGCGTCGCCGCATTGCCCTTCGCGTCGCCGAGCGCCTTCGTGATGGCGCAGTCGGCGCTGCCGGAGGCCCACCA
GATCCTGGTCATCGCGCAGGACCATCACCGCACCGTCGTCGACGCCATCGAGAACCGCGAAGGCGCCCGCGCCGAAGCGG
TGATGCGCGAACACGCCCGGCTCGCGGTACGCAATCTGCGGCTGGCGCTGCGCAACCGCACGCATCTCGACCTGCTGCCG
GCGCTGGCGCTGGCGACGGCGTCGGTCGACAAGTAA

Upstream 100 bases:

>100_bases
CAATCTCAATATCGATGCCGGCGCGATGTGGTCGCGCAAGCTGATCGACCGCATGGTCGCGAAGGAAGCCGCGCCGCGGC
TGCAAGCGGCGGAGTAAGCG

Downstream 100 bases:

>100_bases
CGGAGGCCCGCATGCGCTTCGCCGAACACTGGAGTTTCGCAACCGTCATGGCGACGCGCGATCTTGCCCCGACCATCCGC
GAGATCGTGCTGAAGCCGGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MNEKIADRSMSQTVRAQLALRDMVLSGQLRAGERISELQAVDITGVSRTPVRMALVRLEDEGLLQAIPSGGFMVKAFSER
DILDSIELRGTMEGLAARLAAERGVSARQLEPLKECLGDIDQLVQQDPVSVDAFSSYVALNARFHALLNELSGSSPVMRQ
IDRVAALPFASPSAFVMAQSALPEAHQILVIAQDHHRTVVDAIENREGARAEAVMREHARLAVRNLRLALRNRTHLDLLP
ALALATASVDK

Sequences:

>Translated_251_residues
MNEKIADRSMSQTVRAQLALRDMVLSGQLRAGERISELQAVDITGVSRTPVRMALVRLEDEGLLQAIPSGGFMVKAFSER
DILDSIELRGTMEGLAARLAAERGVSARQLEPLKECLGDIDQLVQQDPVSVDAFSSYVALNARFHALLNELSGSSPVMRQ
IDRVAALPFASPSAFVMAQSALPEAHQILVIAQDHHRTVVDAIENREGARAEAVMREHARLAVRNLRLALRNRTHLDLLP
ALALATASVDK
>Mature_251_residues
MNEKIADRSMSQTVRAQLALRDMVLSGQLRAGERISELQAVDITGVSRTPVRMALVRLEDEGLLQAIPSGGFMVKAFSER
DILDSIELRGTMEGLAARLAAERGVSARQLEPLKECLGDIDQLVQQDPVSVDAFSSYVALNARFHALLNELSGSSPVMRQ
IDRVAALPFASPSAFVMAQSALPEAHQILVIAQDHHRTVVDAIENREGARAEAVMREHARLAVRNLRLALRNRTHLDLLP
ALALATASVDK

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27401; Mature: 27401

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEKIADRSMSQTVRAQLALRDMVLSGQLRAGERISELQAVDITGVSRTPVRMALVRLED
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEECCCCCCCHHHEEEEECC
EGLLQAIPSGGFMVKAFSERDILDSIELRGTMEGLAARLAAERGVSARQLEPLKECLGDI
CCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
DQLVQQDPVSVDAFSSYVALNARFHALLNELSGSSPVMRQIDRVAALPFASPSAFVMAQS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
ALPEAHQILVIAQDHHRTVVDAIENREGARAEAVMREHARLAVRNLRLALRNRTHLDLLP
CCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ALALATASVDK
HHHHHHHCCCC
>Mature Secondary Structure
MNEKIADRSMSQTVRAQLALRDMVLSGQLRAGERISELQAVDITGVSRTPVRMALVRLED
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEECCCCCCCHHHEEEEECC
EGLLQAIPSGGFMVKAFSERDILDSIELRGTMEGLAARLAAERGVSARQLEPLKECLGDI
CCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
DQLVQQDPVSVDAFSSYVALNARFHALLNELSGSSPVMRQIDRVAALPFASPSAFVMAQS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
ALPEAHQILVIAQDHHRTVVDAIENREGARAEAVMREHARLAVRNLRLALRNRTHLDLLP
CCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ALALATASVDK
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]