| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is ydjC [C]
Identifier: 86748966
GI number: 86748966
Start: 2109287
End: 2110162
Strand: Reverse
Name: ydjC [C]
Synonym: RPB_1843
Alternate gene names: 86748966
Gene position: 2110162-2109287 (Counterclockwise)
Preceding gene: 86748967
Following gene: 86748965
Centisome position: 39.58
GC content: 69.06
Gene sequence:
>876_bases ATGAGCGCCGTGGCGCCGCGGCGGATCTGGCTGTGCGCCGACGATTACGGCCTCAGCCCCGGCGTCAACCGCGCCATCCT CGACCTGATCGAGCGCCGCCGCATCAACGCCACCTCGGTGATGATGGTGGGGCCCGCGATCGGCCGCGCCGACGTCCGCG CGCTGCTGGATGCGACCACGGCCAATCCCGATTGCGCCATCGGCCTGCATGCGACGCTGACCGCGCCGTTCTCGCCGCTG ACGATGCACTACCACCCGCTGCATGGCGGCATCTTCCTGCCGCTCGGCCGCAAGCTGCGCGGCACCTTGTTGCGCCGGCA CGACCGGCACGTCATCGCCGCCGAATTGACGGCGCAGCTCGAAGCCTTCGCCGAACGCTTCGGGCGGATGCCGGACTACG TCGACGGCCACCAGCACGTGCAGCTGTTTCCGCAGGTCCGCGACGCCTTCGTCGGCGTGGTTCAGGCGCTGGCGCCGCAC GCCTGGGTCCGGCAATGCGGCCGGGCGCAGCCGCTGGCGCAGCGGCTCGGCGCGCCGAAACCATTGCTGCTCGATGTGCT GAGCGCCCCGTTCCGCAAACGCGCGGCGCAAGCCGGCCTCGCCTTCAATCCGGGTTTTGCCGGCGCCTATGATTTCTCCC GCGAGACCGACTTCGAGAAACTCCTGACCTCGTTTCTCGACGGCCTGCCGGACGGCGGGCTGGTGATGTGTCACCCCGGC TTCGTCGATGATGTGCTGATCAGCCTCGATCCGTTCACCGATCAGCGCGAGCGCGAACACGCCTTTCTCGCCGGCGACCG CTTCCTGCCGCTGCTGGCGGAGCACAATGTGACGCTGGCGCGACCGGCCGCCTCGCCCTCTCCTACCGAAAATTAA
Upstream 100 bases:
>100_bases CCGAGCTGAAGGCGCGGCCGATCTACTTCGTCGCCGAGCACAGCGTCCGGCAATCCGACCCGAGCGCCGACGCCGGCCCG GCCAAGCAGACCGCCGCCGA
Downstream 100 bases:
>100_bases TCCGCCCGGGACTTATTGCGGCCCGGCCCGCTCCCTACATTTTTCAGCACTCGCGCGCGTCGCGCCGCATCCGGCGGGCT GCGTCGCGCGGAGCAACGAT
Product: YdjC-like protein
Products: NA
Alternate protein names: YdjC-Like Protein; Cellobiose Phosphorylase
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MSAVAPRRIWLCADDYGLSPGVNRAILDLIERRRINATSVMMVGPAIGRADVRALLDATTANPDCAIGLHATLTAPFSPL TMHYHPLHGGIFLPLGRKLRGTLLRRHDRHVIAAELTAQLEAFAERFGRMPDYVDGHQHVQLFPQVRDAFVGVVQALAPH AWVRQCGRAQPLAQRLGAPKPLLLDVLSAPFRKRAAQAGLAFNPGFAGAYDFSRETDFEKLLTSFLDGLPDGGLVMCHPG FVDDVLISLDPFTDQREREHAFLAGDRFLPLLAEHNVTLARPAASPSPTEN
Sequences:
>Translated_291_residues MSAVAPRRIWLCADDYGLSPGVNRAILDLIERRRINATSVMMVGPAIGRADVRALLDATTANPDCAIGLHATLTAPFSPL TMHYHPLHGGIFLPLGRKLRGTLLRRHDRHVIAAELTAQLEAFAERFGRMPDYVDGHQHVQLFPQVRDAFVGVVQALAPH AWVRQCGRAQPLAQRLGAPKPLLLDVLSAPFRKRAAQAGLAFNPGFAGAYDFSRETDFEKLLTSFLDGLPDGGLVMCHPG FVDDVLISLDPFTDQREREHAFLAGDRFLPLLAEHNVTLARPAASPSPTEN >Mature_290_residues SAVAPRRIWLCADDYGLSPGVNRAILDLIERRRINATSVMMVGPAIGRADVRALLDATTANPDCAIGLHATLTAPFSPLT MHYHPLHGGIFLPLGRKLRGTLLRRHDRHVIAAELTAQLEAFAERFGRMPDYVDGHQHVQLFPQVRDAFVGVVQALAPHA WVRQCGRAQPLAQRLGAPKPLLLDVLSAPFRKRAAQAGLAFNPGFAGAYDFSRETDFEKLLTSFLDGLPDGGLVMCHPGF VDDVLISLDPFTDQREREHAFLAGDRFLPLLAEHNVTLARPAASPSPTEN
Specific function: Unknown
COG id: COG3394
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31854; Mature: 31723
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVAPRRIWLCADDYGLSPGVNRAILDLIERRRINATSVMMVGPAIGRADVRALLDATT CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCC ANPDCAIGLHATLTAPFSPLTMHYHPLHGGIFLPLGRKLRGTLLRRHDRHVIAAELTAQL CCCCEEEEEEEEEECCCCCCEEEEEECCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHH EAFAERFGRMPDYVDGHQHVQLFPQVRDAFVGVVQALAPHAWVRQCGRAQPLAQRLGAPK HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHCCCCC PLLLDVLSAPFRKRAAQAGLAFNPGFAGAYDFSRETDFEKLLTSFLDGLPDGGLVMCHPG HHHHHHHCCHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCC FVDDVLISLDPFTDQREREHAFLAGDRFLPLLAEHNVTLARPAASPSPTEN CHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHCCCEEEECCCCCCCCCCC >Mature Secondary Structure SAVAPRRIWLCADDYGLSPGVNRAILDLIERRRINATSVMMVGPAIGRADVRALLDATT CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCC ANPDCAIGLHATLTAPFSPLTMHYHPLHGGIFLPLGRKLRGTLLRRHDRHVIAAELTAQL CCCCEEEEEEEEEECCCCCCEEEEEECCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHH EAFAERFGRMPDYVDGHQHVQLFPQVRDAFVGVVQALAPHAWVRQCGRAQPLAQRLGAPK HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHCCCCC PLLLDVLSAPFRKRAAQAGLAFNPGFAGAYDFSRETDFEKLLTSFLDGLPDGGLVMCHPG HHHHHHHCCHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCC FVDDVLISLDPFTDQREREHAFLAGDRFLPLLAEHNVTLARPAASPSPTEN CHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHCCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA