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The map label for this gene is yddA [C]

Identifier: 86748955

GI number: 86748955

Start: 2096608

End: 2098359

Strand: Reverse

Name: yddA [C]

Synonym: RPB_1832

Alternate gene names: 86748955

Gene position: 2098359-2096608 (Counterclockwise)

Preceding gene: 86748957

Following gene: 86748946

Centisome position: 39.36

GC content: 65.81

Gene sequence:

>1752_bases
GTGACCAACATCCGATCCACCCTGGCGACCGTCTGGCGCATCGCGGTGCCGTATTTCAAATCCGAAGACCGCCGGATGGG
CCGCATCCTGCTGGCGACGGTGGTCGTCATCGAACTCGCCGTGGTCGGCCTCGCGGTGCTGTTCAATCGCTGGAACAACG
TTTTCTACAACGCGCTGCAGGAGCGCGACTACAACGTGTTCGCCTATCAGCTCGGCTATTTCTGCGTGCTCGCGGCGATC
TTCATCGCGCTCAAGGTCTATCAGCTCTATCTCAACCAGTGGCTGCAGATCCGCTGGCGGCGCTGGATGACCGAGCGTTA
TCTCGGCGAATGGCTGCACGATTCCAACCACTACCAGATGCAGCTCCAGGGCGACGCCGCCGACAACCCGGATCAGCGCA
TCGCCGAAGACACCCAGATGTTCGTCGAGCGCACGCTGCTGCTGGGTATCGGCCTGCTGAATTCGGTGGTGACGCTGGCC
TCGTTCGTCGTCATCCTCTGGGGCCTTTCCAATGAAGCGCCGCTGCACGTGTTCGGCCAGGATGTTCCGATCCCGGGCTA
TCTGGTGTGGGGGGCGCTGATCTACGCGACCATCGGCACCGCGCTGACGCACTGGATCGGCTCGCCGCTGGCGGATTTGA
ACTTCCGCCAACAGCGCTTCGAGGCCGATTTCCGCTTCAACCTGGTGCGGGCGCGCGAAAACTCCGAGCAGATCGCACTG
CTGCGCGGCGAGACCGCCGAGCGCGGCAAGCTGTCGTCGCGGTTCGGGCTGGTCGCCGATAATTTCATGCGGATCATGTC
CCGGACCAAGAAGTTGACCGCGTTCACGGCGAGCTACTCGCAGGCCTCGATCATCTTTCCCTACATCCTGGTGGCCCCGG
CTTATTTCGCCCAGAGGGTTCAGCTCGGCGGCCTGATGCAGACCGCATCGGCCTTCAACAGCGTCCAGGATTCGCTGTCG
TTCTTCGTCACCGCCTACCGCACCCTGGCGGAGTGGCAATCGGTGGTCGCCCGGCTCGACGGCTTCGAGGCCTCGATCCG
GAACGCAACCGCGCAGCGCGCCAATCCCGGCATCAGCCGCGTGGTCGCGCAGTCCGGTGATGCGATCGGTCTCGACGATC
TCGAGCTGACTTTGCCCGCCGGGCAGCCGCTGATGCGTGCGGACGATTTCCGGATCAGCGGCAAACAGCGCACGCTGATC
GCCGGGCCGTCCGGCTCCGGCAAGTCGACGCTGTTCCGCGCCATCGCGGGGATCTGGCCGTTCGGCTCGGGCGCGATCGC
GATCCCCGCCGGGGCGACGATCATGATGCTGCCGCAGCGGCCCTACTTTCCGGTCGGCGAACTCCATGCCGCGATCGTCT
ATCCGTCGGAGACCGCGGCGTTCAGCGCCGCGCAGGTGGCCGAGGTGGTGAAAGACGTCGGGCTGCCGGCGCTGGCGGAC
CGGCTCGGCGAGCACGGCCATTGGAACCGGACGCTGTCGCTCGGCGAACAGCAGCGGCTCGGCGTCGCGCGCGCACTGCT
GCACGCGCCGAACTACCTGTTTCTGGACGAGGCCACCGCCTCGCTGGACGAGCCATCGGAAGCGGCGCTGTACCGCCTGC
TCGATCAGAAGCTGCCCGACACCACCATCGTCTCGATCGGCCACCGCTCGACGCTCAACGCCTTCCACGACCGCGACGCC
GTGCTGGGCCGCTCCGGCGACAGTTTCACGTTGCAGGACAAGGTGCGCACCGTCGCGCCGGCACAGAGCTGA

Upstream 100 bases:

>100_bases
ATGCTAGGGTGCGACACGTGGGCGCGCGCCGTAGGTCGTACACCTACAATTCTGTCGAACGGCCCTCGCCCGAGGGCTTC
GCACCCGGAGACGTTCATCC

Downstream 100 bases:

>100_bases
CGGGAAGTTCGGCGCGAAACGCGCTCAGTCTCGACCCTCATGGAGAGGAACATCGCGCAGCGTAGCGAAGCCGGGCGCTC
CGCCTCTTCAGGCCCGTGTC

Product: ABC transporter-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 583; Mature: 582

Protein sequence:

>583_residues
MTNIRSTLATVWRIAVPYFKSEDRRMGRILLATVVVIELAVVGLAVLFNRWNNVFYNALQERDYNVFAYQLGYFCVLAAI
FIALKVYQLYLNQWLQIRWRRWMTERYLGEWLHDSNHYQMQLQGDAADNPDQRIAEDTQMFVERTLLLGIGLLNSVVTLA
SFVVILWGLSNEAPLHVFGQDVPIPGYLVWGALIYATIGTALTHWIGSPLADLNFRQQRFEADFRFNLVRARENSEQIAL
LRGETAERGKLSSRFGLVADNFMRIMSRTKKLTAFTASYSQASIIFPYILVAPAYFAQRVQLGGLMQTASAFNSVQDSLS
FFVTAYRTLAEWQSVVARLDGFEASIRNATAQRANPGISRVVAQSGDAIGLDDLELTLPAGQPLMRADDFRISGKQRTLI
AGPSGSGKSTLFRAIAGIWPFGSGAIAIPAGATIMMLPQRPYFPVGELHAAIVYPSETAAFSAAQVAEVVKDVGLPALAD
RLGEHGHWNRTLSLGEQQRLGVARALLHAPNYLFLDEATASLDEPSEAALYRLLDQKLPDTTIVSIGHRSTLNAFHDRDA
VLGRSGDSFTLQDKVRTVAPAQS

Sequences:

>Translated_583_residues
MTNIRSTLATVWRIAVPYFKSEDRRMGRILLATVVVIELAVVGLAVLFNRWNNVFYNALQERDYNVFAYQLGYFCVLAAI
FIALKVYQLYLNQWLQIRWRRWMTERYLGEWLHDSNHYQMQLQGDAADNPDQRIAEDTQMFVERTLLLGIGLLNSVVTLA
SFVVILWGLSNEAPLHVFGQDVPIPGYLVWGALIYATIGTALTHWIGSPLADLNFRQQRFEADFRFNLVRARENSEQIAL
LRGETAERGKLSSRFGLVADNFMRIMSRTKKLTAFTASYSQASIIFPYILVAPAYFAQRVQLGGLMQTASAFNSVQDSLS
FFVTAYRTLAEWQSVVARLDGFEASIRNATAQRANPGISRVVAQSGDAIGLDDLELTLPAGQPLMRADDFRISGKQRTLI
AGPSGSGKSTLFRAIAGIWPFGSGAIAIPAGATIMMLPQRPYFPVGELHAAIVYPSETAAFSAAQVAEVVKDVGLPALAD
RLGEHGHWNRTLSLGEQQRLGVARALLHAPNYLFLDEATASLDEPSEAALYRLLDQKLPDTTIVSIGHRSTLNAFHDRDA
VLGRSGDSFTLQDKVRTVAPAQS
>Mature_582_residues
TNIRSTLATVWRIAVPYFKSEDRRMGRILLATVVVIELAVVGLAVLFNRWNNVFYNALQERDYNVFAYQLGYFCVLAAIF
IALKVYQLYLNQWLQIRWRRWMTERYLGEWLHDSNHYQMQLQGDAADNPDQRIAEDTQMFVERTLLLGIGLLNSVVTLAS
FVVILWGLSNEAPLHVFGQDVPIPGYLVWGALIYATIGTALTHWIGSPLADLNFRQQRFEADFRFNLVRARENSEQIALL
RGETAERGKLSSRFGLVADNFMRIMSRTKKLTAFTASYSQASIIFPYILVAPAYFAQRVQLGGLMQTASAFNSVQDSLSF
FVTAYRTLAEWQSVVARLDGFEASIRNATAQRANPGISRVVAQSGDAIGLDDLELTLPAGQPLMRADDFRISGKQRTLIA
GPSGSGKSTLFRAIAGIWPFGSGAIAIPAGATIMMLPQRPYFPVGELHAAIVYPSETAAFSAAQVAEVVKDVGLPALADR
LGEHGHWNRTLSLGEQQRLGVARALLHAPNYLFLDEATASLDEPSEAALYRLLDQKLPDTTIVSIGHRSTLNAFHDRDAV
LGRSGDSFTLQDKVRTVAPAQS

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4826958, Length=548, Percent_Identity=23.9051094890511, Blast_Score=156, Evalue=6e-38,
Organism=Homo sapiens, GI9945308, Length=521, Percent_Identity=24.7600767754319, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI4506341, Length=601, Percent_Identity=22.6289517470882, Blast_Score=136, Evalue=5e-32,
Organism=Homo sapiens, GI7262393, Length=575, Percent_Identity=23.1304347826087, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI9955963, Length=288, Percent_Identity=26.3888888888889, Blast_Score=77, Evalue=5e-14,
Organism=Homo sapiens, GI171184400, Length=187, Percent_Identity=30.4812834224599, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI9955968, Length=197, Percent_Identity=29.9492385786802, Blast_Score=67, Evalue=6e-11,
Organism=Homo sapiens, GI9955966, Length=197, Percent_Identity=29.9492385786802, Blast_Score=66, Evalue=7e-11,
Organism=Homo sapiens, GI45243524, Length=197, Percent_Identity=29.9492385786802, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI1787772, Length=548, Percent_Identity=32.8467153284672, Blast_Score=313, Evalue=3e-86,
Organism=Escherichia coli, GI1786575, Length=339, Percent_Identity=24.7787610619469, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1787112, Length=197, Percent_Identity=28.9340101522843, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786654, Length=216, Percent_Identity=28.2407407407407, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787143, Length=278, Percent_Identity=26.2589928057554, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1786563, Length=228, Percent_Identity=28.0701754385965, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1788165, Length=147, Percent_Identity=36.0544217687075, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17532409, Length=528, Percent_Identity=24.0530303030303, Blast_Score=156, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17532411, Length=506, Percent_Identity=24.1106719367589, Blast_Score=149, Evalue=4e-36,
Organism=Caenorhabditis elegans, GI17564250, Length=544, Percent_Identity=26.2867647058824, Blast_Score=141, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17542146, Length=605, Percent_Identity=23.3057851239669, Blast_Score=136, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI72000520, Length=521, Percent_Identity=26.1036468330134, Blast_Score=126, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17558960, Length=223, Percent_Identity=35.8744394618834, Blast_Score=115, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI72000518, Length=178, Percent_Identity=36.5168539325843, Blast_Score=108, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71992285, Length=430, Percent_Identity=23.4883720930233, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17543740, Length=174, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=198, Percent_Identity=28.2828282828283, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17565938, Length=215, Percent_Identity=28.8372093023256, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=186, Percent_Identity=26.8817204301075, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71988343, Length=212, Percent_Identity=26.8867924528302, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=197, Percent_Identity=28.4263959390863, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=216, Percent_Identity=28.2407407407407, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=256, Percent_Identity=29.296875, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI86564969, Length=188, Percent_Identity=29.2553191489362, Blast_Score=72, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71992066, Length=188, Percent_Identity=29.2553191489362, Blast_Score=72, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI25146765, Length=188, Percent_Identity=29.2553191489362, Blast_Score=72, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71992070, Length=188, Percent_Identity=29.2553191489362, Blast_Score=72, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=213, Percent_Identity=28.6384976525822, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71992080, Length=188, Percent_Identity=29.2553191489362, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=204, Percent_Identity=28.921568627451, Blast_Score=69, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6325110, Length=577, Percent_Identity=23.050259965338, Blast_Score=106, Evalue=9e-24,
Organism=Saccharomyces cerevisiae, GI6322660, Length=449, Percent_Identity=23.8307349665924, Blast_Score=97, Evalue=9e-21,
Organism=Saccharomyces cerevisiae, GI6324985, Length=211, Percent_Identity=30.8056872037915, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643394, Length=536, Percent_Identity=23.8805970149254, Blast_Score=131, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24638550, Length=531, Percent_Identity=23.5404896421846, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24638552, Length=531, Percent_Identity=23.5404896421846, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24638554, Length=531, Percent_Identity=23.5404896421846, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24638546, Length=531, Percent_Identity=23.5404896421846, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24638556, Length=531, Percent_Identity=23.5404896421846, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24638548, Length=531, Percent_Identity=23.5404896421846, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24638558, Length=531, Percent_Identity=23.5404896421846, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI21357907, Length=269, Percent_Identity=25.2788104089219, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24648279, Length=216, Percent_Identity=28.7037037037037, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281361582, Length=200, Percent_Identity=28, Blast_Score=71, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 64715; Mature: 64584

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNIRSTLATVWRIAVPYFKSEDRRMGRILLATVVVIELAVVGLAVLFNRWNNVFYNALQ
CCCHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERDYNVFAYQLGYFCVLAAIFIALKVYQLYLNQWLQIRWRRWMTERYLGEWLHDSNHYQM
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
QLQGDAADNPDQRIAEDTQMFVERTLLLGIGLLNSVVTLASFVVILWGLSNEAPLHVFGQ
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
DVPIPGYLVWGALIYATIGTALTHWIGSPLADLNFRQQRFEADFRFNLVRARENSEQIAL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHCCCCEEEEEEECCCCCEEEE
LRGETAERGKLSSRFGLVADNFMRIMSRTKKLTAFTASYSQASIIFPYILVAPAYFAQRV
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHH
QLGGLMQTASAFNSVQDSLSFFVTAYRTLAEWQSVVARLDGFEASIRNATAQRANPGISR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHH
VVAQSGDAIGLDDLELTLPAGQPLMRADDFRISGKQRTLIAGPSGSGKSTLFRAIAGIWP
HHHCCCCCCCCCCCEEEECCCCCCCCCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHCC
FGSGAIAIPAGATIMMLPQRPYFPVGELHAAIVYPSETAAFSAAQVAEVVKDVGLPALAD
CCCCCEEECCCCEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHH
RLGEHGHWNRTLSLGEQQRLGVARALLHAPNYLFLDEATASLDEPSEAALYRLLDQKLPD
HCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCC
TTIVSIGHRSTLNAFHDRDAVLGRSGDSFTLQDKVRTVAPAQS
CEEEECCCCHHHHHHHCCCHHHCCCCCCEEHHHHHHHHCCCCC
>Mature Secondary Structure 
TNIRSTLATVWRIAVPYFKSEDRRMGRILLATVVVIELAVVGLAVLFNRWNNVFYNALQ
CCHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERDYNVFAYQLGYFCVLAAIFIALKVYQLYLNQWLQIRWRRWMTERYLGEWLHDSNHYQM
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
QLQGDAADNPDQRIAEDTQMFVERTLLLGIGLLNSVVTLASFVVILWGLSNEAPLHVFGQ
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
DVPIPGYLVWGALIYATIGTALTHWIGSPLADLNFRQQRFEADFRFNLVRARENSEQIAL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHCCCCEEEEEEECCCCCEEEE
LRGETAERGKLSSRFGLVADNFMRIMSRTKKLTAFTASYSQASIIFPYILVAPAYFAQRV
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHH
QLGGLMQTASAFNSVQDSLSFFVTAYRTLAEWQSVVARLDGFEASIRNATAQRANPGISR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHH
VVAQSGDAIGLDDLELTLPAGQPLMRADDFRISGKQRTLIAGPSGSGKSTLFRAIAGIWP
HHHCCCCCCCCCCCEEEECCCCCCCCCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHCC
FGSGAIAIPAGATIMMLPQRPYFPVGELHAAIVYPSETAAFSAAQVAEVVKDVGLPALAD
CCCCCEEECCCCEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHH
RLGEHGHWNRTLSLGEQQRLGVARALLHAPNYLFLDEATASLDEPSEAALYRLLDQKLPD
HCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCC
TTIVSIGHRSTLNAFHDRDAVLGRSGDSFTLQDKVRTVAPAQS
CEEEECCCCHHHHHHHCCCHHHCCCCCCEEHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]