Click here to switch to the map view.

The map label for this gene is cspE [C]

Identifier: 86748914

GI number: 86748914

Start: 2051651

End: 2051863

Strand: Reverse

Name: cspE [C]

Synonym: RPB_1791

Alternate gene names: 86748914

Gene position: 2051863-2051651 (Counterclockwise)

Preceding gene: 86748915

Following gene: 86748910

Centisome position: 38.48

GC content: 61.97

Gene sequence:

>213_bases
GTGAGCATGGGAACCGTGAAGTGGTTCAACGCGACCAAGGGCTACGGCTTCATCCAGCCGGATGATGGCGGCAACGACGT
GTTCGTTCACATCAGCGCCGTCGAGCGCGCGGGCCTCGGCACGCTGCGTGAAGGCCAGAAGATCAGCTACGAAATCGTCG
CCGATCGCCGCTCTGGCAAGTCGTCTGCCGATAATCTGCGCGCTGCCAGCTAA

Upstream 100 bases:

>100_bases
CCGGTTCAGAACGCTGACGACCCTTCCAAAATTCGATCTCACCAGCCCGCCTGGTCATCAGATGGGCTCCGACTGTCTAT
ATTGAGAAGGGACTACCCCC

Downstream 100 bases:

>100_bases
GCAGACCGTCTGGACGAAGACCCCGAGGCCGCGCCACAGCGCGGCCTTTTTAATTTGAACAGAGCCGCACCCTTTGCGGC
CTTTCCAATTTCAGCAGCAC

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSMGTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGKSSADNLRAAS

Sequences:

>Translated_70_residues
MSMGTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGKSSADNLRAAS
>Mature_69_residues
SMGTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGKSSADNLRAAS

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=52.4590163934426, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1789979, Length=49, Percent_Identity=63.265306122449, Blast_Score=72, Evalue=8e-15,
Organism=Escherichia coli, GI2367114, Length=54, Percent_Identity=53.7037037037037, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1788126, Length=61, Percent_Identity=50.8196721311475, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787839, Length=49, Percent_Identity=59.1836734693878, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1787107, Length=52, Percent_Identity=48.0769230769231, Blast_Score=63, Evalue=4e-12,
Organism=Escherichia coli, GI1787834, Length=49, Percent_Identity=53.0612244897959, Blast_Score=62, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7535; Mature: 7404

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMGTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK
CCCCCEEEECCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCC
SSADNLRAAS
CCCCCCCCCC
>Mature Secondary Structure 
SMGTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEIVADRRSGK
CCCCEEEECCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCC
SSADNLRAAS
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]