| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is glyS [H]
Identifier: 86748220
GI number: 86748220
Start: 1255029
End: 1257311
Strand: Direct
Name: glyS [H]
Synonym: RPB_1095
Alternate gene names: 86748220
Gene position: 1255029-1257311 (Clockwise)
Preceding gene: 86748219
Following gene: 86748221
Centisome position: 23.54
GC content: 63.51
Gene sequence:
>2283_bases ATGCCCGATCTCCTCCTCGAACTGTTCTCCGAAGAAATCCCGGCGCGGATGCAGGCGAAGGCTGCTGACGATCTCAGGCG GCTGGTGACCGACAAGCTCGTGGCGGAAGGACTCGTCTATGAGGGCGCCAAGGCGTTCGCGACGCCGCGGCGGCTGACGC TGACGGTGCACGGCATTCCGGCGCGGCAGCCGGATCTCAAGGACGAGCGCAAGGGGCCGAAGGTCGGCGCGCCGGATGCC GCCGTGCAGGGCTTCCTCAAGGCCACCGGGCTCGCCTCGCTGGACGAGGCCACGATCCAGAAGGACCCGAAGAAGGGCGA CTTCTACGTCGCGCTGATCGAAAAGCCGGGCAAGCCGGCGATCGACGTGCTGGCCGAGATCCTGCCGGTGATCGTCCGCA CCTTCCCGTGGCCGAAATCGATGCGCTGGGGCGAGCGCTCGGCCAAGCCCGGCGCGCTGCAATGGGTGCGGCCGCTGCAT TCGATCGTCGCGACGTTCGGCATCGACACCGAAGAGCCGGACGTGGTGGCGTTCGACATCAGCGGCATCCAGGCCGGGCA AGTGACGCGCGGCCACAGATTCATGGCGCCGGACGAAATCAGCGTGCGCCGCTTCGAGGACTACGAGGCGAAGCTGTATG CCGCCAAGGTCGTGCTCGACCCGCAGCGCCGCCGCGACATCATCCTCGCCGACGCCAAGACGCTGGCGCAGGCGCAGAAC TACGAACTGGTCGAGGATCAGGGGCTGCTCGACGAAGTGTCGGGGCTGGTCGAATGGCCGGTGGCGCTGATGGGCTCGTT CGACGAGGCCTTCCTGTCGATCCCCGGCGAAGTGATCCGCGCCACCATCCGCGCCAACCAGAAGTGCTTCGTGGTCTCTG ATCCCGCGACCGGCAAGCTCGCCAACAAGTTCATCCTGACCGCGAACATCGAAGCCAGCGACGGCGGCGCCGCGATCACC GCCGGCAACGAACGCGTGATCCGCGCACGATTGAGCGACGCGCGGCATTTCTGGGAGACCGATCATAAATCCCTTCCGGA GTATCGCGATAGCGGCTTGCGTCCGCTGGATCAGCGTCTCAAGAAGATTCGGGATCAGAAAATCGTCTTCCACGCGAGCC TTGGTACTCAAGGCGAACGTATAGATCGGATCATTCGTCTTGCGCGTGAGATTGCTCCGTTGGTCGGAGCCGATCCAGAC AAGGCCGCCCGTGCGGCCGAATTGGCGAAGGCCGATCTCGTCACCGAAGTGGTCGGCGAATTCCCCGAGCTGCAGGGCCT GATGGGCAAATACTACGCGCTGGCGCAAGGCGAAGACGCCAGCGTCGCCGCTGCGTGCGAAGAGCACTACAAGCCGCAAG GCCCGGCTGATCGCGTCCCGACCGATCCGGTGAGCATCGCGGTGGCGTTGGCTGATAAGCTGGATACGCTGGTCGGCTTC TGGGCGATCGACGAGAAGCCAACGGGGAGCAAGGACCCGTATGCTCTGCGACGCGCGGCGTTGGGGGTAATCAGGCTGCT CGTGGATAACGGCATTCGAATGCATCTTCAACGAAAGTCATTGCTGATTGAGATGCGTTTTCGAATCCTTGGTGCGCTCG CGCGAGAGCGTGGTTTCACAAAACAACTTACGTCGACGCTCGATATTCTCAATTCGGATAAGGACCATGCTTCTCTTGAG GTTGAACTGATAAGTAGCCTGGAACGTTCTATTGAAGGTCTCTATTCGGAAATCTTCGCGAAGGCCGACGCAGCTCAACT CAACCTCCTCTCTTTCTTCGCCGATCGCCTGAAAGTCCAGCTCCGCGATCAAGGTGCCCGTCACGATCTTGTCGACGCCG TGTTCGCGCTGGAAGGCCAGGACGACATCCTGATGATCGTCCGCCGCGTCGAGGCGCTCGCGGCGTTCCTTGCGACCGAC GACGGCAAGAACCTGCTCGCCGGTACCAAGCGTGCGGCGAATATTCTGCGCATCGAGGAGAAGAAGGACGGTCGCGCCTT CGACGGTGCGCCGGATGCGTCGCTGTATGCACAGGACGAGGAGAAGGCGCTCGCCGCCGCGATCGATCGGGCGCGGGCGG AGGCGACCGAGGCCGTGGCGCGCGAAGACTTCGCCGCGGCGATGACCGCGATGGCCGGGCTGCGGCCGGCGGTCGATGCG TTCTTCGAGCACGTCACGGTCAACGCCGACGACAAATCCGTCCGCGAAAATCGCCTGAAGCTGCTGAATGAGATCCGCGC CGCGACGCGCGCGGTGGCGGATTTCTCGAAGATCCAGGATTAA
Upstream 100 bases:
>100_bases CAATCTATAACGCGATCGCTGTCACCCCACCCCGCTCGCCGTTGGCGAGCGACCCTCCCCCTCAAGGGGAGGGTGGGGCC GTGCGTGGGGAGAAGGAATA
Downstream 100 bases:
>100_bases TTGCGGAAAAGTGAGCCGCAGGGCCGCAACATCGGCAGCGCGCTCCCTCGCCCCGCTCTTCGCGGGGAGAGGGGTGGGGT GAGGGGCTGCGGCCTCCCCG
Product: glycyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS [H]
Number of amino acids: Translated: 760; Mature: 759
Protein sequence:
>760_residues MPDLLLELFSEEIPARMQAKAADDLRRLVTDKLVAEGLVYEGAKAFATPRRLTLTVHGIPARQPDLKDERKGPKVGAPDA AVQGFLKATGLASLDEATIQKDPKKGDFYVALIEKPGKPAIDVLAEILPVIVRTFPWPKSMRWGERSAKPGALQWVRPLH SIVATFGIDTEEPDVVAFDISGIQAGQVTRGHRFMAPDEISVRRFEDYEAKLYAAKVVLDPQRRRDIILADAKTLAQAQN YELVEDQGLLDEVSGLVEWPVALMGSFDEAFLSIPGEVIRATIRANQKCFVVSDPATGKLANKFILTANIEASDGGAAIT AGNERVIRARLSDARHFWETDHKSLPEYRDSGLRPLDQRLKKIRDQKIVFHASLGTQGERIDRIIRLAREIAPLVGADPD KAARAAELAKADLVTEVVGEFPELQGLMGKYYALAQGEDASVAAACEEHYKPQGPADRVPTDPVSIAVALADKLDTLVGF WAIDEKPTGSKDPYALRRAALGVIRLLVDNGIRMHLQRKSLLIEMRFRILGALARERGFTKQLTSTLDILNSDKDHASLE VELISSLERSIEGLYSEIFAKADAAQLNLLSFFADRLKVQLRDQGARHDLVDAVFALEGQDDILMIVRRVEALAAFLATD DGKNLLAGTKRAANILRIEEKKDGRAFDGAPDASLYAQDEEKALAAAIDRARAEATEAVAREDFAAAMTAMAGLRPAVDA FFEHVTVNADDKSVRENRLKLLNEIRAATRAVADFSKIQD
Sequences:
>Translated_760_residues MPDLLLELFSEEIPARMQAKAADDLRRLVTDKLVAEGLVYEGAKAFATPRRLTLTVHGIPARQPDLKDERKGPKVGAPDA AVQGFLKATGLASLDEATIQKDPKKGDFYVALIEKPGKPAIDVLAEILPVIVRTFPWPKSMRWGERSAKPGALQWVRPLH SIVATFGIDTEEPDVVAFDISGIQAGQVTRGHRFMAPDEISVRRFEDYEAKLYAAKVVLDPQRRRDIILADAKTLAQAQN YELVEDQGLLDEVSGLVEWPVALMGSFDEAFLSIPGEVIRATIRANQKCFVVSDPATGKLANKFILTANIEASDGGAAIT AGNERVIRARLSDARHFWETDHKSLPEYRDSGLRPLDQRLKKIRDQKIVFHASLGTQGERIDRIIRLAREIAPLVGADPD KAARAAELAKADLVTEVVGEFPELQGLMGKYYALAQGEDASVAAACEEHYKPQGPADRVPTDPVSIAVALADKLDTLVGF WAIDEKPTGSKDPYALRRAALGVIRLLVDNGIRMHLQRKSLLIEMRFRILGALARERGFTKQLTSTLDILNSDKDHASLE VELISSLERSIEGLYSEIFAKADAAQLNLLSFFADRLKVQLRDQGARHDLVDAVFALEGQDDILMIVRRVEALAAFLATD DGKNLLAGTKRAANILRIEEKKDGRAFDGAPDASLYAQDEEKALAAAIDRARAEATEAVAREDFAAAMTAMAGLRPAVDA FFEHVTVNADDKSVRENRLKLLNEIRAATRAVADFSKIQD >Mature_759_residues PDLLLELFSEEIPARMQAKAADDLRRLVTDKLVAEGLVYEGAKAFATPRRLTLTVHGIPARQPDLKDERKGPKVGAPDAA VQGFLKATGLASLDEATIQKDPKKGDFYVALIEKPGKPAIDVLAEILPVIVRTFPWPKSMRWGERSAKPGALQWVRPLHS IVATFGIDTEEPDVVAFDISGIQAGQVTRGHRFMAPDEISVRRFEDYEAKLYAAKVVLDPQRRRDIILADAKTLAQAQNY ELVEDQGLLDEVSGLVEWPVALMGSFDEAFLSIPGEVIRATIRANQKCFVVSDPATGKLANKFILTANIEASDGGAAITA GNERVIRARLSDARHFWETDHKSLPEYRDSGLRPLDQRLKKIRDQKIVFHASLGTQGERIDRIIRLAREIAPLVGADPDK AARAAELAKADLVTEVVGEFPELQGLMGKYYALAQGEDASVAAACEEHYKPQGPADRVPTDPVSIAVALADKLDTLVGFW AIDEKPTGSKDPYALRRAALGVIRLLVDNGIRMHLQRKSLLIEMRFRILGALARERGFTKQLTSTLDILNSDKDHASLEV ELISSLERSIEGLYSEIFAKADAAQLNLLSFFADRLKVQLRDQGARHDLVDAVFALEGQDDILMIVRRVEALAAFLATDD GKNLLAGTKRAANILRIEEKKDGRAFDGAPDASLYAQDEEKALAAAIDRARAEATEAVAREDFAAAMTAMAGLRPAVDAF FEHVTVNADDKSVRENRLKLLNEIRAATRAVADFSKIQD
Specific function: Unknown
COG id: COG0751
COG function: function code J; Glycyl-tRNA synthetase, beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1789982, Length=766, Percent_Identity=32.6370757180157, Blast_Score=338, Evalue=7e-94,
Paralogues:
None
Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008909 - InterPro: IPR006194 - InterPro: IPR015944 - InterPro: IPR002311 [H]
Pfam domain/function: PF05746 DALR_1; PF02092 tRNA_synt_2f [H]
EC number: =6.1.1.14 [H]
Molecular weight: Translated: 83447; Mature: 83316
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDLLLELFSEEIPARMQAKAADDLRRLVTDKLVAEGLVYEGAKAFATPRRLTLTVHGIP CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEEECCC ARQPDLKDERKGPKVGAPDAAVQGFLKATGLASLDEATIQKDPKKGDFYVALIEKPGKPA CCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEEEEEECCCCCH IDVLAEILPVIVRTFPWPKSMRWGERSAKPGALQWVRPLHSIVATFGIDTEEPDVVAFDI HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE SGIQAGQVTRGHRFMAPDEISVRRFEDYEAKLYAAKVVLDPQRRRDIILADAKTLAQAQN CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEEECCHHCCCEEEECHHHHHHHCC YELVEDQGLLDEVSGLVEWPVALMGSFDEAFLSIPGEVIRATIRANQKCFVVSDPATGKL CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCC ANKFILTANIEASDGGAAITAGNERVIRARLSDARHFWETDHKSLPEYRDSGLRPLDQRL CCEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHCCCHHHHCCCCHHHHHH KKIRDQKIVFHASLGTQGERIDRIIRLAREIAPLVGADPDKAARAAELAKADLVTEVVGE HHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC FPELQGLMGKYYALAQGEDASVAAACEEHYKPQGPADRVPTDPVSIAVALADKLDTLVGF CHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHE WAIDEKPTGSKDPYALRRAALGVIRLLVDNGIRMHLQRKSLLIEMRFRILGALARERGFT EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHH KQLTSTLDILNSDKDHASLEVELISSLERSIEGLYSEIFAKADAAQLNLLSFFADRLKVQ HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LRDQGARHDLVDAVFALEGQDDILMIVRRVEALAAFLATDDGKNLLAGTKRAANILRIEE HHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHEEEEC KKDGRAFDGAPDASLYAQDEEKALAAAIDRARAEATEAVAREDFAAAMTAMAGLRPAVDA CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH FFEHVTVNADDKSVRENRLKLLNEIRAATRAVADFSKIQD HHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PDLLLELFSEEIPARMQAKAADDLRRLVTDKLVAEGLVYEGAKAFATPRRLTLTVHGIP HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEEECCC ARQPDLKDERKGPKVGAPDAAVQGFLKATGLASLDEATIQKDPKKGDFYVALIEKPGKPA CCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEEEEEECCCCCH IDVLAEILPVIVRTFPWPKSMRWGERSAKPGALQWVRPLHSIVATFGIDTEEPDVVAFDI HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEE SGIQAGQVTRGHRFMAPDEISVRRFEDYEAKLYAAKVVLDPQRRRDIILADAKTLAQAQN CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEEECCHHCCCEEEECHHHHHHHCC YELVEDQGLLDEVSGLVEWPVALMGSFDEAFLSIPGEVIRATIRANQKCFVVSDPATGKL CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCC ANKFILTANIEASDGGAAITAGNERVIRARLSDARHFWETDHKSLPEYRDSGLRPLDQRL CCEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHCCCHHHHCCCCHHHHHH KKIRDQKIVFHASLGTQGERIDRIIRLAREIAPLVGADPDKAARAAELAKADLVTEVVGE HHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC FPELQGLMGKYYALAQGEDASVAAACEEHYKPQGPADRVPTDPVSIAVALADKLDTLVGF CHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHE WAIDEKPTGSKDPYALRRAALGVIRLLVDNGIRMHLQRKSLLIEMRFRILGALARERGFT EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHH KQLTSTLDILNSDKDHASLEVELISSLERSIEGLYSEIFAKADAAQLNLLSFFADRLKVQ HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LRDQGARHDLVDAVFALEGQDDILMIVRRVEALAAFLATDDGKNLLAGTKRAANILRIEE HHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHEEEEC KKDGRAFDGAPDASLYAQDEEKALAAAIDRARAEATEAVAREDFAAAMTAMAGLRPAVDA CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH FFEHVTVNADDKSVRENRLKLLNEIRAATRAVADFSKIQD HHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA