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The map label for this gene is ycjD [C]

Identifier: 86748219

GI number: 86748219

Start: 1254595

End: 1255029

Strand: Direct

Name: ycjD [C]

Synonym: RPB_1094

Alternate gene names: 86748219

Gene position: 1254595-1255029 (Clockwise)

Preceding gene: 86748218

Following gene: 86748220

Centisome position: 23.53

GC content: 59.08

Gene sequence:

>435_bases
ATGGTCAAACGCCAGATCAGCGACTTCAAGCGCACCACCGCGAACAAACTGCGGACGAACAGCACCGCTGCCGAAGACAT
CCTGTGGCGGCAACTACGACGAATGAATGTGGAAGGAAGTCACTTCAGACGGCAGGTTGTGATCGGGCCCTATATCGCCG
ATTTCGCCTGCCTCGCGAAGCGATTGATCATCGAGGTCGACGGTTCACAACACGGCGACGAAGACGGCCTGAGGCGTGAC
GAAACGCGAACGCAATGGCTGCAGTCGGAAGGCTACCGGGTGATCCGATTTTGGAACAATGATGTGATGAGCAAGACCGA
CGCCGTGATGGACGCAATCTATAACGCGATCGCTGTCACCCCACCCCGCTCGCCGTTGGCGAGCGACCCTCCCCCTCAAG
GGGAGGGTGGGGCCGTGCGTGGGGAGAAGGAATAA

Upstream 100 bases:

>100_bases
GAGGCGTGGCTGCACACGGAGGCGGGCGGTTCTTCACCCTCCCCTGGAGGGGGAGGGTCGCTCGCGTGAGCGAGCGGGGT
GGGGTGACAGCGGTTGCGAC

Downstream 100 bases:

>100_bases
TGCCCGATCTCCTCCTCGAACTGTTCTCCGAAGAAATCCCGGCGCGGATGCAGGCGAAGGCTGCTGACGATCTCAGGCGG
CTGGTGACCGACAAGCTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MVKRQISDFKRTTANKLRTNSTAAEDILWRQLRRMNVEGSHFRRQVVIGPYIADFACLAKRLIIEVDGSQHGDEDGLRRD
ETRTQWLQSEGYRVIRFWNNDVMSKTDAVMDAIYNAIAVTPPRSPLASDPPPQGEGGAVRGEKE

Sequences:

>Translated_144_residues
MVKRQISDFKRTTANKLRTNSTAAEDILWRQLRRMNVEGSHFRRQVVIGPYIADFACLAKRLIIEVDGSQHGDEDGLRRD
ETRTQWLQSEGYRVIRFWNNDVMSKTDAVMDAIYNAIAVTPPRSPLASDPPPQGEGGAVRGEKE
>Mature_144_residues
MVKRQISDFKRTTANKLRTNSTAAEDILWRQLRRMNVEGSHFRRQVVIGPYIADFACLAKRLIIEVDGSQHGDEDGLRRD
ETRTQWLQSEGYRVIRFWNNDVMSKTDAVMDAIYNAIAVTPPRSPLASDPPPQGEGGAVRGEKE

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=112, Percent_Identity=39.2857142857143, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 16359; Mature: 16359

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKRQISDFKRTTANKLRTNSTAAEDILWRQLRRMNVEGSHFRRQVVIGPYIADFACLAK
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHEEEEECHHHHHHHHHHH
RLIIEVDGSQHGDEDGLRRDETRTQWLQSEGYRVIRFWNNDVMSKTDAVMDAIYNAIAVT
HHHEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
PPRSPLASDPPPQGEGGAVRGEKE
CCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVKRQISDFKRTTANKLRTNSTAAEDILWRQLRRMNVEGSHFRRQVVIGPYIADFACLAK
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHEEEEECHHHHHHHHHHH
RLIIEVDGSQHGDEDGLRRDETRTQWLQSEGYRVIRFWNNDVMSKTDAVMDAIYNAIAVT
HHHEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
PPRSPLASDPPPQGEGGAVRGEKE
CCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]