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The map label for this gene is cydB [H]

Identifier: 86748055

GI number: 86748055

Start: 1074596

End: 1075747

Strand: Direct

Name: cydB [H]

Synonym: RPB_0930

Alternate gene names: 86748055

Gene position: 1074596-1075747 (Clockwise)

Preceding gene: 86748054

Following gene: 86748056

Centisome position: 20.16

GC content: 67.71

Gene sequence:

>1152_bases
ATGCTCGACTACGAGACTCTCAAGTTCGTCTGGTGGATCTTCGTCGGCCTGTTGCTGATGGGCTTCGCCATCACCGACGG
CATGGACATGGGCGTCGGCACCTTGCTGCCGTTCGTCGCCCGCAAGGATGTCGAACGCCGCATCGCCATCAACTCGGTCG
GCCCGCATTGGGACGGCAACCAGGTCTGGTTCATCACCGCCGGCGGCGCGATCTTCGCCGCCTGGCCCGCGGTCTACGCC
GCCGCATTCTCCGGCTTCTACATGGCGATGCTGCTGGTGCTGTTCGCGCTGTTCTTCCGCCCGGTCGGGTTCGACTATCG
CTCCAAAATCGAGAACCCGACCTGGCGCAACGCCTGGGACTGGGGGCTGTTCGCCGGCGGCGCCATCCCGGCGCTGATCT
TCGGCGTCGCCTTCGGCAACCTGCTGCAGGGCGTGCCGTTCCGGCTCGACGAATTGCTGCGCTCCCACTATCAGGGCTCG
CTGCTGACGGCGCTGCTGCCGCTGCTCAATCCGTTCGCGCTGCTCGCCGGCGTGATCAGCCTGGCGATGCTCGCCGCGCA
CGGCGGGGTCTGGCTGCAGCTTCGCGCCTCGGGCGCGGTCGCCGATCGCGCCCGCAAGGCGGTGCTGTTGCTGTCGCCGA
TCGTGGCGGTGGCGTTCGCCCTGGCCGGGGTCTGGCTGTGGCTCGGCGTCGACGGCTATCGCATCGTCAAGGAGGCGGCG
CACAGCGCGGCGTCGAACCCGCTCGCCAAGGAGGTGGTGCGCGCGCCCGGCGCCTGGCTCGACATCTACGCCAAACAGCC
GTTGGCGATGATCGTCCCGGCGCTCGGCCTGGTCGGCCCGTTGCTCACGATGCTGCTGGCGGCCGTGCACCGGCCGGGCC
TCGCCTTCGTCACCAGCGCATTCGGGATGATCGGCATCATCGGCACCGCCGGGCTGTCGATGTTCCCGTTCATCATGCCG
TCGAGCATCGATCCGAGATCGAGCCTGACGATCTGGGACGCCGCGTCGAGCGAACTGACCCTGACGGTGATGTTCTGGGC
GGTGGTGATCTTCCTGCCGATCGTGCTCGGCTACACCGTGTGGTGCTACGCCAACATGTGGGGCAGGGTCACCGCCGACG
AAATCGAAGCCCGCGCCCATTCGGCCTACTGA

Upstream 100 bases:

>100_bases
TTCGCCCGGCTCGGTCCGAGTTCGCTTGGCACCGGGCGTTATCACTTCGAGACCAACGCCAAGCCCGCCGCAGTGACAGT
GTGAGCCGGAGGAGATCATC

Downstream 100 bases:

>100_bases
GGGAGATCGACCATGTGGTACTTCGCCTGGATCCTCGGCGTCACCGCCGCTGCGGCGATCGCCGTCATCAACGTGATGTG
GTACGAGTTTCAGGACGGTC

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MLDYETLKFVWWIFVGLLLMGFAITDGMDMGVGTLLPFVARKDVERRIAINSVGPHWDGNQVWFITAGGAIFAAWPAVYA
AAFSGFYMAMLLVLFALFFRPVGFDYRSKIENPTWRNAWDWGLFAGGAIPALIFGVAFGNLLQGVPFRLDELLRSHYQGS
LLTALLPLLNPFALLAGVISLAMLAAHGGVWLQLRASGAVADRARKAVLLLSPIVAVAFALAGVWLWLGVDGYRIVKEAA
HSAASNPLAKEVVRAPGAWLDIYAKQPLAMIVPALGLVGPLLTMLLAAVHRPGLAFVTSAFGMIGIIGTAGLSMFPFIMP
SSIDPRSSLTIWDAASSELTLTVMFWAVVIFLPIVLGYTVWCYANMWGRVTADEIEARAHSAY

Sequences:

>Translated_383_residues
MLDYETLKFVWWIFVGLLLMGFAITDGMDMGVGTLLPFVARKDVERRIAINSVGPHWDGNQVWFITAGGAIFAAWPAVYA
AAFSGFYMAMLLVLFALFFRPVGFDYRSKIENPTWRNAWDWGLFAGGAIPALIFGVAFGNLLQGVPFRLDELLRSHYQGS
LLTALLPLLNPFALLAGVISLAMLAAHGGVWLQLRASGAVADRARKAVLLLSPIVAVAFALAGVWLWLGVDGYRIVKEAA
HSAASNPLAKEVVRAPGAWLDIYAKQPLAMIVPALGLVGPLLTMLLAAVHRPGLAFVTSAFGMIGIIGTAGLSMFPFIMP
SSIDPRSSLTIWDAASSELTLTVMFWAVVIFLPIVLGYTVWCYANMWGRVTADEIEARAHSAY
>Mature_383_residues
MLDYETLKFVWWIFVGLLLMGFAITDGMDMGVGTLLPFVARKDVERRIAINSVGPHWDGNQVWFITAGGAIFAAWPAVYA
AAFSGFYMAMLLVLFALFFRPVGFDYRSKIENPTWRNAWDWGLFAGGAIPALIFGVAFGNLLQGVPFRLDELLRSHYQGS
LLTALLPLLNPFALLAGVISLAMLAAHGGVWLQLRASGAVADRARKAVLLLSPIVAVAFALAGVWLWLGVDGYRIVKEAA
HSAASNPLAKEVVRAPGAWLDIYAKQPLAMIVPALGLVGPLLTMLLAAVHRPGLAFVTSAFGMIGIIGTAGLSMFPFIMP
SSIDPRSSLTIWDAASSELTLTVMFWAVVIFLPIVLGYTVWCYANMWGRVTADEIEARAHSAY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=383, Percent_Identity=57.9634464751958, Blast_Score=456, Evalue=1e-129,
Organism=Escherichia coli, GI1787213, Length=383, Percent_Identity=52.4804177545692, Blast_Score=406, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41552; Mature: 41552

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDYETLKFVWWIFVGLLLMGFAITDGMDMGVGTLLPFVARKDVERRIAINSVGPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCC
QVWFITAGGAIFAAWPAVYAAAFSGFYMAMLLVLFALFFRPVGFDYRSKIENPTWRNAWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCC
WGLFAGGAIPALIFGVAFGNLLQGVPFRLDELLRSHYQGSLLTALLPLLNPFALLAGVIS
CCHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LAMLAAHGGVWLQLRASGAVADRARKAVLLLSPIVAVAFALAGVWLWLGVDGYRIVKEAA
HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
HSAASNPLAKEVVRAPGAWLDIYAKQPLAMIVPALGLVGPLLTMLLAAVHRPGLAFVTSA
HHHCCCHHHHHHHHCCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FGMIGIIGTAGLSMFPFIMPSSIDPRSSLTIWDAASSELTLTVMFWAVVIFLPIVLGYTV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
WCYANMWGRVTADEIEARAHSAY
HHHHHHCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MLDYETLKFVWWIFVGLLLMGFAITDGMDMGVGTLLPFVARKDVERRIAINSVGPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCC
QVWFITAGGAIFAAWPAVYAAAFSGFYMAMLLVLFALFFRPVGFDYRSKIENPTWRNAWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCC
WGLFAGGAIPALIFGVAFGNLLQGVPFRLDELLRSHYQGSLLTALLPLLNPFALLAGVIS
CCHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LAMLAAHGGVWLQLRASGAVADRARKAVLLLSPIVAVAFALAGVWLWLGVDGYRIVKEAA
HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
HSAASNPLAKEVVRAPGAWLDIYAKQPLAMIVPALGLVGPLLTMLLAAVHRPGLAFVTSA
HHHCCCHHHHHHHHCCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FGMIGIIGTAGLSMFPFIMPSSIDPRSSLTIWDAASSELTLTVMFWAVVIFLPIVLGYTV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
WCYANMWGRVTADEIEARAHSAY
HHHHHHCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]