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The map label for this gene is cydA [H]

Identifier: 86748054

GI number: 86748054

Start: 1073005

End: 1074579

Strand: Direct

Name: cydA [H]

Synonym: RPB_0929

Alternate gene names: 86748054

Gene position: 1073005-1074579 (Clockwise)

Preceding gene: 86748050

Following gene: 86748055

Centisome position: 20.13

GC content: 64.32

Gene sequence:

>1575_bases
ATGGTGGACTCAACATTCGTAGAGCTGTCGCGCTGGCAGTTCGCCGCGACCGCGCTCTATCATTTCCTGTTCGTGCCGCT
GACGCTCGGACTCTCCTGGCTCCTGGTCATCATGGAGACGGTCTACGTGATGACCGGCAAGGAGATCTACAAGGACATGA
CGAAGTTCTGGGGCAAGTTGTTCGGCATCAACTTCGCCCTTGGCGTCACCACAGGCCTGACCATGGAGTTCGAGTTCGGG
ACCAACTGGTCGTACTACTCGCACTATGTCGGCGACGTGTTCGGCGCGCCGCTGGCGATCGAAGGCCTGATGGCGTTCTT
CCTGGAATCGACCTTCATCGGCCTGTTCTTCCTCGGTTGGGACCGGCTGTCGAAGCGCAAGCATCTGGCGGTGACGTTCC
TCACCGCGATCGGCTCGAACCTGTCGGCGCTGTGGATCCTGATCGCCAACGGCTGGATGCAGAATCCCGTCGGCTCGGTG
TTCTCGCCGGAGACGATGCGGATGGAGATGACCAGCTTCGCCGAGGTGTTCCTCAACCCGGTGGCGCAGGTGAAGTTCGT
CCACACCGTCGCGGCGGGCTACGTCACCGCGTCGGTGTTCGTGATGGGCATCTCCGCCTGGTACATCCTGAAGGGGCGGG
ATCTGGCGTTCGCGCGTCGCTCGTTCGCGGTCGCGGTCGGCTTCGGCCTGGCGTCGTCGCTGTCGGTGATCGTGCTCGGT
GACGAGAGCGGCTACACCCTCGGCGACGTGCAAAAGGTCAAGCTCGCCGCGATTGAGGGCGAATGGCACACCGAGAAGCC
GCCAGCGGCGTTCACGCTGTTCGGCTTCCCGAGCCAGACCGGCCAGGCGATCGCCGACGCGATCAAGATCCCCGCGGTGC
TCGGGCTGATCGCGACGCGGTCGATCGACAAGCCGGTGCAGGGCCTGGCCGACCTCGAACGCGAGCATCTGGCGCGGATC
GAATCCGGGCGGATCGCCTATGCGGCGATGACCAAGATTCGCGCCGGCGACACGTCGCCGGAGACCCGCAAGACCTTCGA
CGCCCACGTCAGGGACCTCGGCTTCGGCCTGCTGCTGAAGCAGTTCGTCGAGGATCCGGCGAACGCCACGCCGGAGCAGA
TCAAGGCCGCCGCGGCGTCGACCATCCCGACGGTGTGGCCGCTGTTCTGGGCGTTCCGCATCATGGTCGCGCTGGGCTTC
CTGATGCTGTTCACCTTCGCGGCCGGCTTCTGGTTCAACGCGACCAAGCGGCTCGAACAGAAGCGCTGGTTCCTGTGGTT
CACGGTGCTGTTGATCCCGGCGCCGTGGCTCGCCTCGGAAGCGGGATGGTTCGTCGCCGAATTCGGCCGGCAACCGTGGG
CGATCGGCGAAGTGCTGCCGACCTTCCTGGCGACCTCGAGCCTGACCACGGGAGATTTGATCTTCTCGCTGACCGGCTTC
CTGGCCTTCTACACGCTGCTGCTGGTGATCGAGGTGTACCTGATGTTCAAGTTCGCCCGGCTCGGTCCGAGTTCGCTTGG
CACCGGGCGTTATCACTTCGAGACCAACGCCAAGCCCGCCGCAGTGACAGTGTGA

Upstream 100 bases:

>100_bases
CGGCCGCATGCGATGCCCCGCATGCCCAATCTCACCGCATCGCTACGGAGCCGCCGCCTGCCGCGGATCGGCTTCACTCC
TCGGAAGGATGTCGGACATC

Downstream 100 bases:

>100_bases
GCCGGAGGAGATCATCATGCTCGACTACGAGACTCTCAAGTTCGTCTGGTGGATCTTCGTCGGCCTGTTGCTGATGGGCT
TCGCCATCACCGACGGCATG

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MVDSTFVELSRWQFAATALYHFLFVPLTLGLSWLLVIMETVYVMTGKEIYKDMTKFWGKLFGINFALGVTTGLTMEFEFG
TNWSYYSHYVGDVFGAPLAIEGLMAFFLESTFIGLFFLGWDRLSKRKHLAVTFLTAIGSNLSALWILIANGWMQNPVGSV
FSPETMRMEMTSFAEVFLNPVAQVKFVHTVAAGYVTASVFVMGISAWYILKGRDLAFARRSFAVAVGFGLASSLSVIVLG
DESGYTLGDVQKVKLAAIEGEWHTEKPPAAFTLFGFPSQTGQAIADAIKIPAVLGLIATRSIDKPVQGLADLEREHLARI
ESGRIAYAAMTKIRAGDTSPETRKTFDAHVRDLGFGLLLKQFVEDPANATPEQIKAAAASTIPTVWPLFWAFRIMVALGF
LMLFTFAAGFWFNATKRLEQKRWFLWFTVLLIPAPWLASEAGWFVAEFGRQPWAIGEVLPTFLATSSLTTGDLIFSLTGF
LAFYTLLLVIEVYLMFKFARLGPSSLGTGRYHFETNAKPAAVTV

Sequences:

>Translated_524_residues
MVDSTFVELSRWQFAATALYHFLFVPLTLGLSWLLVIMETVYVMTGKEIYKDMTKFWGKLFGINFALGVTTGLTMEFEFG
TNWSYYSHYVGDVFGAPLAIEGLMAFFLESTFIGLFFLGWDRLSKRKHLAVTFLTAIGSNLSALWILIANGWMQNPVGSV
FSPETMRMEMTSFAEVFLNPVAQVKFVHTVAAGYVTASVFVMGISAWYILKGRDLAFARRSFAVAVGFGLASSLSVIVLG
DESGYTLGDVQKVKLAAIEGEWHTEKPPAAFTLFGFPSQTGQAIADAIKIPAVLGLIATRSIDKPVQGLADLEREHLARI
ESGRIAYAAMTKIRAGDTSPETRKTFDAHVRDLGFGLLLKQFVEDPANATPEQIKAAAASTIPTVWPLFWAFRIMVALGF
LMLFTFAAGFWFNATKRLEQKRWFLWFTVLLIPAPWLASEAGWFVAEFGRQPWAIGEVLPTFLATSSLTTGDLIFSLTGF
LAFYTLLLVIEVYLMFKFARLGPSSLGTGRYHFETNAKPAAVTV
>Mature_524_residues
MVDSTFVELSRWQFAATALYHFLFVPLTLGLSWLLVIMETVYVMTGKEIYKDMTKFWGKLFGINFALGVTTGLTMEFEFG
TNWSYYSHYVGDVFGAPLAIEGLMAFFLESTFIGLFFLGWDRLSKRKHLAVTFLTAIGSNLSALWILIANGWMQNPVGSV
FSPETMRMEMTSFAEVFLNPVAQVKFVHTVAAGYVTASVFVMGISAWYILKGRDLAFARRSFAVAVGFGLASSLSVIVLG
DESGYTLGDVQKVKLAAIEGEWHTEKPPAAFTLFGFPSQTGQAIADAIKIPAVLGLIATRSIDKPVQGLADLEREHLARI
ESGRIAYAAMTKIRAGDTSPETRKTFDAHVRDLGFGLLLKQFVEDPANATPEQIKAAAASTIPTVWPLFWAFRIMVALGF
LMLFTFAAGFWFNATKRLEQKRWFLWFTVLLIPAPWLASEAGWFVAEFGRQPWAIGEVLPTFLATSSLTTGDLIFSLTGF
LAFYTLLLVIEVYLMFKFARLGPSSLGTGRYHFETNAKPAAVTV

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=517, Percent_Identity=66.9245647969052, Blast_Score=712, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=502, Percent_Identity=57.9681274900398, Blast_Score=588, Evalue=1e-169,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58052; Mature: 58052

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDSTFVELSRWQFAATALYHFLFVPLTLGLSWLLVIMETVYVMTGKEIYKDMTKFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FGINFALGVTTGLTMEFEFGTNWSYYSHYVGDVFGAPLAIEGLMAFFLESTFIGLFFLGW
HCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
DRLSKRKHLAVTFLTAIGSNLSALWILIANGWMQNPVGSVFSPETMRMEMTSFAEVFLNP
HHHCCCHHHHHHHHHHHCCCHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VAQVKFVHTVAAGYVTASVFVMGISAWYILKGRDLAFARRSFAVAVGFGLASSLSVIVLG
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCHHCCCEEEEEE
DESGYTLGDVQKVKLAAIEGEWHTEKPPAAFTLFGFPSQTGQAIADAIKIPAVLGLIATR
CCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
SIDKPVQGLADLEREHLARIESGRIAYAAMTKIRAGDTSPETRKTFDAHVRDLGFGLLLK
CCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
QFVEDPANATPEQIKAAAASTIPTVWPLFWAFRIMVALGFLMLFTFAAGFWFNATKRLEQ
HHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRWFLWFTVLLIPAPWLASEAGWFVAEFGRQPWAIGEVLPTFLATSSLTTGDLIFSLTGF
HHHHHHHHHHHHCCCHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LAFYTLLLVIEVYLMFKFARLGPSSLGTGRYHFETNAKPAAVTV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEC
>Mature Secondary Structure
MVDSTFVELSRWQFAATALYHFLFVPLTLGLSWLLVIMETVYVMTGKEIYKDMTKFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FGINFALGVTTGLTMEFEFGTNWSYYSHYVGDVFGAPLAIEGLMAFFLESTFIGLFFLGW
HCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
DRLSKRKHLAVTFLTAIGSNLSALWILIANGWMQNPVGSVFSPETMRMEMTSFAEVFLNP
HHHCCCHHHHHHHHHHHCCCHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VAQVKFVHTVAAGYVTASVFVMGISAWYILKGRDLAFARRSFAVAVGFGLASSLSVIVLG
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCHHCCCEEEEEE
DESGYTLGDVQKVKLAAIEGEWHTEKPPAAFTLFGFPSQTGQAIADAIKIPAVLGLIATR
CCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
SIDKPVQGLADLEREHLARIESGRIAYAAMTKIRAGDTSPETRKTFDAHVRDLGFGLLLK
CCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
QFVEDPANATPEQIKAAAASTIPTVWPLFWAFRIMVALGFLMLFTFAAGFWFNATKRLEQ
HHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRWFLWFTVLLIPAPWLASEAGWFVAEFGRQPWAIGEVLPTFLATSSLTTGDLIFSLTGF
HHHHHHHHHHHHCCCHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LAFYTLLLVIEVYLMFKFARLGPSSLGTGRYHFETNAKPAAVTV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]