Click here to switch to the map view.

The map label for this gene is pcaC [H]

Identifier: 86747956

GI number: 86747956

Start: 944281

End: 944661

Strand: Reverse

Name: pcaC [H]

Synonym: RPB_0830

Alternate gene names: 86747956

Gene position: 944661-944281 (Counterclockwise)

Preceding gene: 86747958

Following gene: 86747952

Centisome position: 17.72

GC content: 64.57

Gene sequence:

>381_bases
ATGGACAAGACGACGCACGACAAGGGGCTCGAGATCCGCAAGGCGGTGCTGGGCGAAGCCTATGTCGAAAACGCGCTGAA
GAACGCCGACGACTTCAACAAGCCGTTCCAGGAAATGGTCACCGAATATTGCTGGGGCGCGATCTGGGGCCGCGAGGAAC
TGCCGCGCAAGACCCGCAGCATGCTCAATCTGGCGATGATCGCGATCCTGAACCGGCCGCACGAACTGCGCGTGCACATC
AAGGGCGCGCTGACCAACGGCGTCAGCCGCGACGAGATCCGCGAGATCTTCATGCAGGTCGCCTGCTACGCGGGGGTCCC
CGCGGGCGTCGACAGCTTCCGCCTCGCCCGCGAGGTGTTCGCGGAGGTCGACAAGGGCTGA

Upstream 100 bases:

>100_bases
TCGGACCCCGGCCCCTGAACCCCGGTTTGCCCGACACGAATGCGTGACGGCGCCGGCGGCAATCCGTAACGTCCGCGCCA
TTGCAACAAGAGGACCCATG

Downstream 100 bases:

>100_bases
GCCGTGCGAACGCCTGGCATCGCCCGGCGGTTAAGGTTGATCGGTTAGGTTAAGCAATGGTTTGCGTTGCTGCGGCGCGG
CGGATCGATACGGTCACCGC

Product: carboxymuconolactone decarboxylase

Products: NA

Alternate protein names: CMD [H]

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MDKTTHDKGLEIRKAVLGEAYVENALKNADDFNKPFQEMVTEYCWGAIWGREELPRKTRSMLNLAMIAILNRPHELRVHI
KGALTNGVSRDEIREIFMQVACYAGVPAGVDSFRLAREVFAEVDKG

Sequences:

>Translated_126_residues
MDKTTHDKGLEIRKAVLGEAYVENALKNADDFNKPFQEMVTEYCWGAIWGREELPRKTRSMLNLAMIAILNRPHELRVHI
KGALTNGVSRDEIREIFMQVACYAGVPAGVDSFRLAREVFAEVDKG
>Mature_126_residues
MDKTTHDKGLEIRKAVLGEAYVENALKNADDFNKPFQEMVTEYCWGAIWGREELPRKTRSMLNLAMIAILNRPHELRVHI
KGALTNGVSRDEIREIFMQVACYAGVPAGVDSFRLAREVFAEVDKG

Specific function: Unknown

COG id: COG0599

COG function: function code S; Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003779
- InterPro:   IPR012788 [H]

Pfam domain/function: PF02627 CMD [H]

EC number: =4.1.1.44 [H]

Molecular weight: Translated: 14281; Mature: 14281

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKTTHDKGLEIRKAVLGEAYVENALKNADDFNKPFQEMVTEYCWGAIWGREELPRKTRS
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHCCHHHHH
MLNLAMIAILNRPHELRVHIKGALTNGVSRDEIREIFMQVACYAGVPAGVDSFRLAREVF
HHHHHHHHHHCCCHHEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AEVDKG
HHHCCC
>Mature Secondary Structure
MDKTTHDKGLEIRKAVLGEAYVENALKNADDFNKPFQEMVTEYCWGAIWGREELPRKTRS
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHCCHHHHH
MLNLAMIAILNRPHELRVHIKGALTNGVSRDEIREIFMQVACYAGVPAGVDSFRLAREVF
HHHHHHHHHHCCCHHEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AEVDKG
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2298704 [H]