Click here to switch to the map view.

The map label for this gene is xylS3 [H]

Identifier: 86747840

GI number: 86747840

Start: 801110

End: 802090

Strand: Reverse

Name: xylS3 [H]

Synonym: RPB_0714

Alternate gene names: 86747840

Gene position: 802090-801110 (Counterclockwise)

Preceding gene: 86747841

Following gene: 86747835

Centisome position: 15.04

GC content: 65.75

Gene sequence:

>981_bases
ATGACCGAACTCCTCAGCGAGCCACTCAGCCGTTTCCGTGCGATGGACACGTCCGATCCGGACGAACTCGCGCACGCGCT
CTCCACCGTCTACGGCGCCCGCAACTTTCAGTGCGGTTCGGCCGGCACGTTCCGCGTGCGGGGCAATTTCGTGCAATTGC
AGGATATCGCGCTCGGCTTCACCTGCGGTCGCGCGCCGCTGAGCGTGGACTTCCCCGAGGCCGACTTTGCGCGACTACAG
ATCGCGCTGACCGGGCAATCGAGTACCCGCAGCGCCGGCGTCACGACGGCGATCGATCCGCGGCAGGCCTGCGTCTCGTC
GCCCGGACGCACCGCTCACACCGAGTTCGGCCCGTTCTACGAGCATTTGCTGCTTCGCGTGCAAAGCAGCGCGATCGACC
GCAAGCTCACGGCGCTGCTCGGCACCAAGCCGAAGCGCGCGATCGAGTTCGAGCCCGCCGCGAGCAACGACCTGCTGCAG
GCGGCCAATCTTCGCCGCCTGATCGGGTTCGTGAACAGTCAGATCAATTCGGCGAGTGCCCCGCTACCCGAGCTGGTGAT
GGCGGAGTTGCAGGAAGCCATCACCCTGCTGTTCCTGACCGCCTATCCGCACAACTTCACCAAATTTCTGGAAGCCGACT
CGCGCAGTGCGGCGCCCGGGCACGTGCGCAGGATCGAGGAATACATCGAGGCCAACTGGGCCGAACCGATCACCATCGAA
ACGCTGACGGACCTGACGGGAATCAGCGCGCGCGGCATCTTCAAGGCCTTCCAGCGCAGCCGCGGCTACTCGCCGATGGC
GTTCGCCAAGCAGGTCCGGCTTCGGCAGGCACGCACCATGCTGCAGCAGGGACGCGCGCTGACCTCGGTCACGGCCGCCG
CCTTCGCCTGCGGCTTCTCCAATCTCGGCCACTTCGCCAAGGACTATCGGACTGCGTTCGGCGAACGGCCGTCGGAAACG
CTGGTCCGATCGAGCAGATAG

Upstream 100 bases:

>100_bases
CCCTTTGCATCGTTCCAGCCGGCATCAACGCCCAAGACGGTATCGAACCGATCCACGGCACGACGATGCTCGACAGCAAG
ACCGCGGGAGCGCTTTCATT

Downstream 100 bases:

>100_bases
GCGCCGCGCGCCGCCGCAACCCACGCGCGGCGCGGGCCGCCTCGTCGAGAGGCGGCCCGCCGACGTCGTTGGCTTAGTCG
ATGATCTCGACGATGCGGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MTELLSEPLSRFRAMDTSDPDELAHALSTVYGARNFQCGSAGTFRVRGNFVQLQDIALGFTCGRAPLSVDFPEADFARLQ
IALTGQSSTRSAGVTTAIDPRQACVSSPGRTAHTEFGPFYEHLLLRVQSSAIDRKLTALLGTKPKRAIEFEPAASNDLLQ
AANLRRLIGFVNSQINSASAPLPELVMAELQEAITLLFLTAYPHNFTKFLEADSRSAAPGHVRRIEEYIEANWAEPITIE
TLTDLTGISARGIFKAFQRSRGYSPMAFAKQVRLRQARTMLQQGRALTSVTAAAFACGFSNLGHFAKDYRTAFGERPSET
LVRSSR

Sequences:

>Translated_326_residues
MTELLSEPLSRFRAMDTSDPDELAHALSTVYGARNFQCGSAGTFRVRGNFVQLQDIALGFTCGRAPLSVDFPEADFARLQ
IALTGQSSTRSAGVTTAIDPRQACVSSPGRTAHTEFGPFYEHLLLRVQSSAIDRKLTALLGTKPKRAIEFEPAASNDLLQ
AANLRRLIGFVNSQINSASAPLPELVMAELQEAITLLFLTAYPHNFTKFLEADSRSAAPGHVRRIEEYIEANWAEPITIE
TLTDLTGISARGIFKAFQRSRGYSPMAFAKQVRLRQARTMLQQGRALTSVTAAAFACGFSNLGHFAKDYRTAFGERPSET
LVRSSR
>Mature_325_residues
TELLSEPLSRFRAMDTSDPDELAHALSTVYGARNFQCGSAGTFRVRGNFVQLQDIALGFTCGRAPLSVDFPEADFARLQI
ALTGQSSTRSAGVTTAIDPRQACVSSPGRTAHTEFGPFYEHLLLRVQSSAIDRKLTALLGTKPKRAIEFEPAASNDLLQA
ANLRRLIGFVNSQINSASAPLPELVMAELQEAITLLFLTAYPHNFTKFLEADSRSAAPGHVRRIEEYIEANWAEPITIET
LTDLTGISARGIFKAFQRSRGYSPMAFAKQVRLRQARTMLQQGRALTSVTAAAFACGFSNLGHFAKDYRTAFGERPSETL
VRSSR

Specific function: Regulatory protein of the TOL plasmid xyl operons. XylS activates the xylXYZLTEGFJQKIH operon required for the degradation of toluene, m-xylene and p-xylene [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788778, Length=104, Percent_Identity=35.5769230769231, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35726; Mature: 35595

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELLSEPLSRFRAMDTSDPDELAHALSTVYGARNFQCGSAGTFRVRGNFVQLQDIALGF
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEHHHEEE
TCGRAPLSVDFPEADFARLQIALTGQSSTRSAGVTTAIDPRQACVSSPGRTAHTEFGPFY
EECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCHHHHHHCCCCCCCCCCCHHHH
EHLLLRVQSSAIDRKLTALLGTKPKRAIEFEPAASNDLLQAANLRRLIGFVNSQINSASA
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
PLPELVMAELQEAITLLFLTAYPHNFTKFLEADSRSAAPGHVRRIEEYIEANWAEPITIE
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEHH
TLTDLTGISARGIFKAFQRSRGYSPMAFAKQVRLRQARTMLQQGRALTSVTAAAFACGFS
HHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
NLGHFAKDYRTAFGERPSETLVRSSR
HHHHHHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure 
TELLSEPLSRFRAMDTSDPDELAHALSTVYGARNFQCGSAGTFRVRGNFVQLQDIALGF
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEHHHEEE
TCGRAPLSVDFPEADFARLQIALTGQSSTRSAGVTTAIDPRQACVSSPGRTAHTEFGPFY
EECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCHHHHHHCCCCCCCCCCCHHHH
EHLLLRVQSSAIDRKLTALLGTKPKRAIEFEPAASNDLLQAANLRRLIGFVNSQINSASA
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
PLPELVMAELQEAITLLFLTAYPHNFTKFLEADSRSAAPGHVRRIEEYIEANWAEPITIE
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEHH
TLTDLTGISARGIFKAFQRSRGYSPMAFAKQVRLRQARTMLQQGRALTSVTAAAFACGFS
HHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
NLGHFAKDYRTAFGERPSETLVRSSR
HHHHHHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8473862 [H]