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The map label for this gene is yfdE [H]

Identifier: 86747771

GI number: 86747771

Start: 730403

End: 731608

Strand: Direct

Name: yfdE [H]

Synonym: RPB_0645

Alternate gene names: 86747771

Gene position: 730403-731608 (Clockwise)

Preceding gene: 86747770

Following gene: 86747772

Centisome position: 13.7

GC content: 67.16

Gene sequence:

>1206_bases
ATGACTCCTGCACTGTTGCCCGGCGCCATTGCCGGTTTGCGCGTGATCGATCTGTCGCGCGTGCTCGGCGGCCCGTATTG
CACCCAGATTCTCGCCGACCACGGCGCCGACGTCATCAAGGTCGAGCCGCCCGCCGGCGACGAGACCCGCGATTGGGGCC
CTCCGTTCCACGACGACGACGCGGCGTATTTCATCGGCACCAACCGCAACAAGCGCTCGATCGGTCTCGACCTCGCCTCC
GAGGGCGGCCGCGCCGTGCTGATGAAGATGCTCGAAGACGCCGACGTCATGATCGAGAACTTCAAGCCCGGCACGCTCGA
CAAATGGGGCATCGGCAACGACGTGCTGCGGGCGAAATTTCCGCAGCTGGTGCATTGCCGGATCTCTGGCTTCGGCGGCG
ACGGTCCGCATGGCGGCCATCCCGGCTACGACGCCATCATCCAGTCGATGGTCGGGCTGATGGAATCGACCGGGACGCCG
GACAGCGGCCCGACCCGCATCGGCGTGGCATTGGTCGACATGGCGACCGGGCTTTACGCCTGCACCGGCATCCTGATGGC
GCTCTTGGAGCGGCAGAAGTCGGGGCTCGGGCAGTTCGTCGAGGCGACGCTGTTCGAAACCGGCCTCGCCATCATGCATC
CGCACGCGGCGAACTTCTTCATTCACGGCAAGCCGCCGGCGCGCACCGGCAACGAACATCCGAATCTCTATCCGTATTCG
GTGTTCGCGGCGCGGGACGGCAACATCTTCATGGGCGTCGGCAATGACGGCACCTTCCGCAAGCTGTGCCGCGAACTCGG
CAGGCCAGAGCTGGGAACCGATCCGCGCTTCGCCCGCAACCGCGACCGCGTCGAAAACCGCCTGGCGCTGCGCGCGGAGC
TGGAGGCGATCCTGACCCAGCACGACGCCGAGCCGCTGTGCCGCAAGCTGCTCGCCGCCGGCCTGCCGGCCGGGCCGGTG
CAGGCGATCGACAAGGCGCTGGCCAGCGAGCACGTCAAGGCCCGCGGCGATATCATCGAGAAGGACTGGTACAAAGGCAT
CGCCTCGCCGATCCGGTTCGACCGTACCAAGGCCAGCCTGCGCCACATTCCGCCGACCTTCAGCCAGCACGCCGGCGAGG
TGCTCGGCGAATTCGGCTACACGCCGGACGAAGTCTCGAAGCTCGTCGCCGACGGCATCGTCAGCGGCCCCGAACGCAAG
CGCTGA

Upstream 100 bases:

>100_bases
TGGGGAGCGCGCCGTGCGCTTTGAAGGGCCGCGCATTTGCCAAGAAGCGCCTCTGACCGGTAAGTTCACCCTCCCGCAAA
GCTTCAATAAGAAAGCCCTC

Downstream 100 bases:

>100_bases
TCCGCGAACTGCGGGCGCTGCGGCGCCCGCAGCCGTCGCCGCGCAGGCTGATGGGCGCGGCCAAGTCTGCTGCAAACCAG
TGTGCTGCAAACCAGTGTGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MTPALLPGAIAGLRVIDLSRVLGGPYCTQILADHGADVIKVEPPAGDETRDWGPPFHDDDAAYFIGTNRNKRSIGLDLAS
EGGRAVLMKMLEDADVMIENFKPGTLDKWGIGNDVLRAKFPQLVHCRISGFGGDGPHGGHPGYDAIIQSMVGLMESTGTP
DSGPTRIGVALVDMATGLYACTGILMALLERQKSGLGQFVEATLFETGLAIMHPHAANFFIHGKPPARTGNEHPNLYPYS
VFAARDGNIFMGVGNDGTFRKLCRELGRPELGTDPRFARNRDRVENRLALRAELEAILTQHDAEPLCRKLLAAGLPAGPV
QAIDKALASEHVKARGDIIEKDWYKGIASPIRFDRTKASLRHIPPTFSQHAGEVLGEFGYTPDEVSKLVADGIVSGPERK
R

Sequences:

>Translated_401_residues
MTPALLPGAIAGLRVIDLSRVLGGPYCTQILADHGADVIKVEPPAGDETRDWGPPFHDDDAAYFIGTNRNKRSIGLDLAS
EGGRAVLMKMLEDADVMIENFKPGTLDKWGIGNDVLRAKFPQLVHCRISGFGGDGPHGGHPGYDAIIQSMVGLMESTGTP
DSGPTRIGVALVDMATGLYACTGILMALLERQKSGLGQFVEATLFETGLAIMHPHAANFFIHGKPPARTGNEHPNLYPYS
VFAARDGNIFMGVGNDGTFRKLCRELGRPELGTDPRFARNRDRVENRLALRAELEAILTQHDAEPLCRKLLAAGLPAGPV
QAIDKALASEHVKARGDIIEKDWYKGIASPIRFDRTKASLRHIPPTFSQHAGEVLGEFGYTPDEVSKLVADGIVSGPERK
R
>Mature_400_residues
TPALLPGAIAGLRVIDLSRVLGGPYCTQILADHGADVIKVEPPAGDETRDWGPPFHDDDAAYFIGTNRNKRSIGLDLASE
GGRAVLMKMLEDADVMIENFKPGTLDKWGIGNDVLRAKFPQLVHCRISGFGGDGPHGGHPGYDAIIQSMVGLMESTGTPD
SGPTRIGVALVDMATGLYACTGILMALLERQKSGLGQFVEATLFETGLAIMHPHAANFFIHGKPPARTGNEHPNLYPYSV
FAARDGNIFMGVGNDGTFRKLCRELGRPELGTDPRFARNRDRVENRLALRAELEAILTQHDAEPLCRKLLAAGLPAGPVQ
AIDKALASEHVKARGDIIEKDWYKGIASPIRFDRTKASLRHIPPTFSQHAGEVLGEFGYTPDEVSKLVADGIVSGPERKR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=400, Percent_Identity=35.5, Blast_Score=258, Evalue=8e-69,
Organism=Homo sapiens, GI300863124, Length=426, Percent_Identity=32.6291079812207, Blast_Score=246, Evalue=4e-65,
Organism=Homo sapiens, GI13376042, Length=426, Percent_Identity=30.2816901408451, Blast_Score=207, Evalue=9e-54,
Organism=Homo sapiens, GI300863126, Length=400, Percent_Identity=31, Blast_Score=196, Evalue=2e-50,
Organism=Homo sapiens, GI42794625, Length=411, Percent_Identity=25.7907542579075, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI266456254, Length=405, Percent_Identity=25.9259259259259, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI266458397, Length=201, Percent_Identity=32.8358208955224, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI266458393, Length=201, Percent_Identity=32.8358208955224, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI42822893, Length=138, Percent_Identity=34.0579710144928, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI266458395, Length=138, Percent_Identity=34.0579710144928, Blast_Score=83, Evalue=6e-16,
Organism=Escherichia coli, GI87082093, Length=382, Percent_Identity=37.434554973822, Blast_Score=258, Evalue=6e-70,
Organism=Escherichia coli, GI1788717, Length=419, Percent_Identity=27.6849642004773, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1786222, Length=401, Percent_Identity=23.1920199501247, Blast_Score=89, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=241, Percent_Identity=25.3112033195021, Blast_Score=71, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI115535051, Length=255, Percent_Identity=27.843137254902, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=41.2658227848101, Blast_Score=312, Evalue=3e-85,
Organism=Drosophila melanogaster, GI24585488, Length=397, Percent_Identity=26.1964735516373, Blast_Score=105, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43312; Mature: 43181

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPALLPGAIAGLRVIDLSRVLGGPYCTQILADHGADVIKVEPPAGDETRDWGPPFHDDD
CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC
AAYFIGTNRNKRSIGLDLASEGGRAVLMKMLEDADVMIENFKPGTLDKWGIGNDVLRAKF
CEEEEECCCCCCEECCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC
PQLVHCRISGFGGDGPHGGHPGYDAIIQSMVGLMESTGTPDSGPTRIGVALVDMATGLYA
CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
CTGILMALLERQKSGLGQFVEATLFETGLAIMHPHAANFFIHGKPPARTGNEHPNLYPYS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEE
VFAARDGNIFMGVGNDGTFRKLCRELGRPELGTDPRFARNRDRVENRLALRAELEAILTQ
EEEECCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHH
HDAEPLCRKLLAAGLPAGPVQAIDKALASEHVKARGDIIEKDWYKGIASPIRFDRTKASL
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
RHIPPTFSQHAGEVLGEFGYTPDEVSKLVADGIVSGPERKR
HCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TPALLPGAIAGLRVIDLSRVLGGPYCTQILADHGADVIKVEPPAGDETRDWGPPFHDDD
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC
AAYFIGTNRNKRSIGLDLASEGGRAVLMKMLEDADVMIENFKPGTLDKWGIGNDVLRAKF
CEEEEECCCCCCEECCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHC
PQLVHCRISGFGGDGPHGGHPGYDAIIQSMVGLMESTGTPDSGPTRIGVALVDMATGLYA
CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
CTGILMALLERQKSGLGQFVEATLFETGLAIMHPHAANFFIHGKPPARTGNEHPNLYPYS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEE
VFAARDGNIFMGVGNDGTFRKLCRELGRPELGTDPRFARNRDRVENRLALRAELEAILTQ
EEEECCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHH
HDAEPLCRKLLAAGLPAGPVQAIDKALASEHVKARGDIIEKDWYKGIASPIRFDRTKASL
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
RHIPPTFSQHAGEVLGEFGYTPDEVSKLVADGIVSGPERKR
HCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]