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The map label for this gene is yciR [C]

Identifier: 86747644

GI number: 86747644

Start: 578210

End: 579949

Strand: Reverse

Name: yciR [C]

Synonym: RPB_0518

Alternate gene names: 86747644

Gene position: 579949-578210 (Counterclockwise)

Preceding gene: 86747647

Following gene: 86747643

Centisome position: 10.88

GC content: 66.84

Gene sequence:

>1740_bases
TTGGCAACGTTCGCAACGTTTTGTGGCGGCATGGGATCCGTGCATTCGATCACACACATTGGAACGGCGCTTGCCGAAAC
AAGCCGGCGCAGGCCGTTGCGGGCGGTGCCGCCGAAGCAGGCGGCTGAGCTGGCGATGTCCGCCTTCGCGGCGATCGATT
CGGCGCTGGCGATGATCGCACCCGACGGCCGGATCATGATGGCCAATCCGGCCTTCGGTCGGCTGTTCGGCGATATTTCG
TCGGAAGATCTGCAGGCGCGCCTGCTGATCGAGTCCTGGCGCAATCTGGAAGGCGGCGAACGCGTCGTGCTGTTTCCGGA
CGGCCGCAGCTTCCTGATCCGCACCAACATATTGCCCTCGGGCTATTTCGTTTGCGCCAGCGACATCACCGATCAGCTCG
CCCGGGATGCACGCGATGCGCGGCTGGTGCGAACCGACCGGCTGACCGAACTCGGCAACCGCCGATTGCTGCGCGAGCGG
CTGCAGGATCTGCTCGACAGCTCGCCCGCGGTCCGCGGCGACTGCGCCCTGCTGACCGTCGACCTCGACCGTTTCAGGGC
GGTCAACGACGCCCTCGGCCGCAACATCGGCGACGCCCTGCTCTGTCTGGTGTCGAAGCGGATCCGCTCCGCGGTGTCCG
ACGTCGACATCGTCACGCGGCTGTATGGCGATCAGTTCGGCATCATTCAGTTCGGACGGGCGCAACCCGACTCCGCCGTC
ATCCTGGCCAAGCGGCTGTGCGATTTGCTGAGCCGCCCCTACATGCTGGAAGGTCAGCTGATCGACGTCACCGCCCGGGT
CGGCATCGCGCCGCTCGCTTTGGAGGCGGCCGATGTCGACCAGGTCATGAAGAACGCCGACCTGGCGCTGAACCGGGCCC
GGCAGGACCGCGCGACCGGCTATTGCGTGTTCGAATCCGGCATGGACGAGACCGTGAAGGCCCGCCGCGCGCTCGAGACC
GATCTGCGCAGGGCGCTGGCGCTGCGCGAATTCGCGCTGGTCTATCAGCCGCAATTCGACCTGCAGACCCGCCGCGTCAC
CGGCTTCGAAGCGCTGCTTCGGTGGAATTCGCCGACCCGCGGGACCGTGTCGCCGCTCGACTTCATTCCGCTCGCCGAAG
AGACCGGCATCATCAATCCGATCGGCGAATGGGTGCTGCGGACCGCCTGCCGCGACGCCGCCAATTGGCCCGCCGACATC
ACCGTCGCGGTCAACATTTCGGCCGTGCAATTCGCTCACCGCACGCTCGCCACCACCGTGCTGTCGGCGCTGTCGGACAG
CGATCTCGATCCGCGGCGGCTGGAGCTCGAGATCACCGAAAGCGTGATGCTCGACGCGCGCGGCACCGCGCTCGGCGTCC
TGCAGCGCCTCCGCGGCACCGGCATCCGCGTCTCGCTCGACGATTTCGGCACCGGCTACTCGTCGCTGGGCTATCTGCGC
AGCTTCCCATTCGACAAGATCAAGATCGATCAGAGCTTCGTCCGCGGCACCGCCGAGGACCCCGGCAACCGCGCGATCGT
GCGCGCGATCGCATCGCTCGGCCAGAACCTCGGCATGGCCACGGTCGCCGAAGGCGTCGAGACCGCCGAGCATCTGGAGC
GCGTCGCCGCCGACGGCTGCACCCATGTGCAGGGCTATCTGATCAGCCGGCCGATTTCGCCCGAACAGGTCGACGGCTTC
CTCGCCGCCAAGAGCGCCGAAGAAACCGAATGCCGTGACGATCCGTTTCAGGTCGCCTGA

Upstream 100 bases:

>100_bases
CATCAGCGTAACCATCGGATCAACCCGTCCGATTCAGCTTGAGCGGGCGCGCTAACCCTCCATTCACCGTCGGTGGACGG
TACCTGAAGGGATTATACCT

Downstream 100 bases:

>100_bases
ATGCCGGAACGGCACTATCGCTGCGTCTACTGGAGCCGGCAACGGATGGAAGGCGGGCCCGAACAGGTCGCGGCCGAGAT
CGAATCCATTCTGAGCGCAG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 579; Mature: 578

Protein sequence:

>579_residues
MATFATFCGGMGSVHSITHIGTALAETSRRRPLRAVPPKQAAELAMSAFAAIDSALAMIAPDGRIMMANPAFGRLFGDIS
SEDLQARLLIESWRNLEGGERVVLFPDGRSFLIRTNILPSGYFVCASDITDQLARDARDARLVRTDRLTELGNRRLLRER
LQDLLDSSPAVRGDCALLTVDLDRFRAVNDALGRNIGDALLCLVSKRIRSAVSDVDIVTRLYGDQFGIIQFGRAQPDSAV
ILAKRLCDLLSRPYMLEGQLIDVTARVGIAPLALEAADVDQVMKNADLALNRARQDRATGYCVFESGMDETVKARRALET
DLRRALALREFALVYQPQFDLQTRRVTGFEALLRWNSPTRGTVSPLDFIPLAEETGIINPIGEWVLRTACRDAANWPADI
TVAVNISAVQFAHRTLATTVLSALSDSDLDPRRLELEITESVMLDARGTALGVLQRLRGTGIRVSLDDFGTGYSSLGYLR
SFPFDKIKIDQSFVRGTAEDPGNRAIVRAIASLGQNLGMATVAEGVETAEHLERVAADGCTHVQGYLISRPISPEQVDGF
LAAKSAEETECRDDPFQVA

Sequences:

>Translated_579_residues
MATFATFCGGMGSVHSITHIGTALAETSRRRPLRAVPPKQAAELAMSAFAAIDSALAMIAPDGRIMMANPAFGRLFGDIS
SEDLQARLLIESWRNLEGGERVVLFPDGRSFLIRTNILPSGYFVCASDITDQLARDARDARLVRTDRLTELGNRRLLRER
LQDLLDSSPAVRGDCALLTVDLDRFRAVNDALGRNIGDALLCLVSKRIRSAVSDVDIVTRLYGDQFGIIQFGRAQPDSAV
ILAKRLCDLLSRPYMLEGQLIDVTARVGIAPLALEAADVDQVMKNADLALNRARQDRATGYCVFESGMDETVKARRALET
DLRRALALREFALVYQPQFDLQTRRVTGFEALLRWNSPTRGTVSPLDFIPLAEETGIINPIGEWVLRTACRDAANWPADI
TVAVNISAVQFAHRTLATTVLSALSDSDLDPRRLELEITESVMLDARGTALGVLQRLRGTGIRVSLDDFGTGYSSLGYLR
SFPFDKIKIDQSFVRGTAEDPGNRAIVRAIASLGQNLGMATVAEGVETAEHLERVAADGCTHVQGYLISRPISPEQVDGF
LAAKSAEETECRDDPFQVA
>Mature_578_residues
ATFATFCGGMGSVHSITHIGTALAETSRRRPLRAVPPKQAAELAMSAFAAIDSALAMIAPDGRIMMANPAFGRLFGDISS
EDLQARLLIESWRNLEGGERVVLFPDGRSFLIRTNILPSGYFVCASDITDQLARDARDARLVRTDRLTELGNRRLLRERL
QDLLDSSPAVRGDCALLTVDLDRFRAVNDALGRNIGDALLCLVSKRIRSAVSDVDIVTRLYGDQFGIIQFGRAQPDSAVI
LAKRLCDLLSRPYMLEGQLIDVTARVGIAPLALEAADVDQVMKNADLALNRARQDRATGYCVFESGMDETVKARRALETD
LRRALALREFALVYQPQFDLQTRRVTGFEALLRWNSPTRGTVSPLDFIPLAEETGIINPIGEWVLRTACRDAANWPADIT
VAVNISAVQFAHRTLATTVLSALSDSDLDPRRLELEITESVMLDARGTALGVLQRLRGTGIRVSLDDFGTGYSSLGYLRS
FPFDKIKIDQSFVRGTAEDPGNRAIVRAIASLGQNLGMATVAEGVETAEHLERVAADGCTHVQGYLISRPISPEQVDGFL
AAKSAEETECRDDPFQVA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=456, Percent_Identity=35.3070175438597, Blast_Score=259, Evalue=3e-70,
Organism=Escherichia coli, GI87081921, Length=434, Percent_Identity=35.2534562211982, Blast_Score=246, Evalue=4e-66,
Organism=Escherichia coli, GI226510982, Length=443, Percent_Identity=28.6681715575621, Blast_Score=178, Evalue=1e-45,
Organism=Escherichia coli, GI1790496, Length=250, Percent_Identity=33.6, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI1788502, Length=236, Percent_Identity=33.8983050847458, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI87081845, Length=242, Percent_Identity=36.3636363636364, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=34.4398340248963, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1786507, Length=232, Percent_Identity=35.3448275862069, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=33.0677290836653, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=30.8016877637131, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI1788849, Length=254, Percent_Identity=31.8897637795276, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI87082096, Length=245, Percent_Identity=27.7551020408163, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1788381, Length=425, Percent_Identity=24.2352941176471, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1786584, Length=180, Percent_Identity=26.1111111111111, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788956, Length=175, Percent_Identity=30.8571428571429, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081977, Length=178, Percent_Identity=27.5280898876405, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081881, Length=272, Percent_Identity=25, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 63295; Mature: 63164

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFATFCGGMGSVHSITHIGTALAETSRRRPLRAVPPKQAAELAMSAFAAIDSALAMIA
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDGRIMMANPAFGRLFGDISSEDLQARLLIESWRNLEGGERVVLFPDGRSFLIRTNILPS
CCCEEEEECCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCC
GYFVCASDITDQLARDARDARLVRTDRLTELGNRRLLRERLQDLLDSSPAVRGDCALLTV
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
DLDRFRAVNDALGRNIGDALLCLVSKRIRSAVSDVDIVTRLYGDQFGIIQFGRAQPDSAV
EHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
ILAKRLCDLLSRPYMLEGQLIDVTARVGIAPLALEAADVDQVMKNADLALNRARQDRATG
HHHHHHHHHHCCCEEECCEEEEEEHHCCCCHHEECHHHHHHHHHHHHHHHHHHHHHCCCE
YCVFESGMDETVKARRALETDLRRALALREFALVYQPQFDLQTRRVTGFEALLRWNSPTR
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
GTVSPLDFIPLAEETGIINPIGEWVLRTACRDAANWPADITVAVNISAVQFAHRTLATTV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHHHH
LSALSDSDLDPRRLELEITESVMLDARGTALGVLQRLRGTGIRVSLDDFGTGYSSLGYLR
HHHHCCCCCCCCEEEEEEHHHHHCCCCCHHHHHHHHHCCCCEEEEHHCCCCCHHHHHHHH
SFPFDKIKIDQSFVRGTAEDPGNRAIVRAIASLGQNLGMATVAEGVETAEHLERVAADGC
HCCCCCEEECHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
THVQGYLISRPISPEQVDGFLAAKSAEETECRDDPFQVA
CHHCCCCEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATFATFCGGMGSVHSITHIGTALAETSRRRPLRAVPPKQAAELAMSAFAAIDSALAMIA
CCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDGRIMMANPAFGRLFGDISSEDLQARLLIESWRNLEGGERVVLFPDGRSFLIRTNILPS
CCCEEEEECCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCC
GYFVCASDITDQLARDARDARLVRTDRLTELGNRRLLRERLQDLLDSSPAVRGDCALLTV
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
DLDRFRAVNDALGRNIGDALLCLVSKRIRSAVSDVDIVTRLYGDQFGIIQFGRAQPDSAV
EHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
ILAKRLCDLLSRPYMLEGQLIDVTARVGIAPLALEAADVDQVMKNADLALNRARQDRATG
HHHHHHHHHHCCCEEECCEEEEEEHHCCCCHHEECHHHHHHHHHHHHHHHHHHHHHCCCE
YCVFESGMDETVKARRALETDLRRALALREFALVYQPQFDLQTRRVTGFEALLRWNSPTR
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
GTVSPLDFIPLAEETGIINPIGEWVLRTACRDAANWPADITVAVNISAVQFAHRTLATTV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHHHH
LSALSDSDLDPRRLELEITESVMLDARGTALGVLQRLRGTGIRVSLDDFGTGYSSLGYLR
HHHHCCCCCCCCEEEEEEHHHHHCCCCCHHHHHHHHHCCCCEEEEHHCCCCCHHHHHHHH
SFPFDKIKIDQSFVRGTAEDPGNRAIVRAIASLGQNLGMATVAEGVETAEHLERVAADGC
HCCCCCEEECHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
THVQGYLISRPISPEQVDGFLAAKSAEETECRDDPFQVA
CHHCCCCEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]