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The map label for this gene is omp2b [H]

Identifier: 86747628

GI number: 86747628

Start: 560323

End: 561774

Strand: Direct

Name: omp2b [H]

Synonym: RPB_0502

Alternate gene names: 86747628

Gene position: 560323-561774 (Clockwise)

Preceding gene: 86747626

Following gene: 86747629

Centisome position: 10.51

GC content: 64.26

Gene sequence:

>1452_bases
ATGAGAGTGATCAAACGACTGGCGCTGGGCACGGCGGCGGCATTGTTGACTGCCGGCGTCGCGCAGGCGGCCGATCTTCC
GATGAAGGCCAAGGCCGTCGAGTACGTCAAGGTCTGCTCGATCTACGGCGCCGGCTTCTACTACATCCCCGGCACCGACA
CCTGCATCAAGCTCGGCGGCTATCTGCGCGCCGACGCCACGTTCGGTGGCTCGGGTGCTTATGACTCCCCGGCCTGGAGC
GGCACCTCCGGCGCCAAGAGCCGCAACGCCAACAGCTATGTGTTCCGTTCGCGTCAGGACATCAACATCGACACCCGCAC
CGCGACCGAATACGGCGTGGTCCGCACCTATTTCGACGCGACCTTCAACTGGACCACGGGCTCCGATTCCACGGCCGGCG
GCACGCTCGGCGTGTATTTCGCCTTCATCCAGTTCGCCGGCTTCACCTTCGGCAAGGCGGTGTCGCAGTTCGATACGCCA
TGGTCGGGCTACCCGGGCAACAACACCTCGTTCCTGATCGGCGGCTATGACGACGTCACCGGCATCAACCAGGTCGCCTA
CACCGCCGAATTCGGCAACGGCGTCTCGGCCTCGATCTCGCTCGAAGATGCGTCGTCCTACAATCAATCGGCGCTGTACA
ACACATCGACCATGACGGCGGCCAATTTCGCCACCGGCGTCTACGGCACCAACTCCTACGCCGGCTCGCAGATCCCCGAC
ATCGTCGGCAAGATCCGCGTCGACCAGGCCTGGGGCCTGTTCCAGGTGTCGGCCGCGGCTCACCAGGTTCGCGCCAGCTA
CTACAACACCGCCCTCGAGACCTCGGGTCATCCGAGCGATACCTGGGGCTACGCGGTGCAGGGCGCAATTTCGCTGAAGA
ACCTGCCGACCGGTCCCGGCGACAGCATCAACTTCACCGCGACCTACTCGAACGGCGCCACCCGCTACGTGATCGGCGGT
TCGTCTCCGAACTCGTTCGCGATGTACGGCAGCTCCAGCTCGGCCTACCAGAGCCTCGCGATCGCGGGCGTGGCTGATGG
TGTGTTCTCCGGCACCGACGTCAGCAACGGCAGCGGCATCTCCAAGACCACCGCATGGGGCGTCCGTGGCGCGTTCAACC
ACAACTGGAATCCCTACTGGTCGACCTCGCTGTTCGGTTCGTACACCTCGATCGACTACAACGGCACCGCGACGGCCCAG
ATCTGCGCCACGGCTGTCGGCTTCACCTGCAACCCGGACTTCAAGATCGCTCAGATCGGCACCGTCACCCGTTGGACCCC
GGTCAAGAACCTGACGTTCTCGGGCGAAGTGATGTACACCTATCTCGACCAGAGCTACTCCGGCAACGTCGCCCTTCCGG
CGGTGTCGTCGGTGTCCAAGCCGGCCGCGACCTACGAGCTCAAGGACCAGGGCGCCTGGAGCGGCAACCTCCGGGTTCAG
CGCACCTTCTGA

Upstream 100 bases:

>100_bases
GGGCGCCGCGCCCACCAAGCGCGTGCACATCGCAGTAACAGGGCCGCCTCTGGCGACGCAATCCGGGGCCGGCTCATTTC
AACCAACCCTGGAGGGCTGA

Downstream 100 bases:

>100_bases
TCAAGGTCGCGCCTCAACGCGTGCATCCGAAACCCCGGCGGGCGACCGCCGGGGTTTCTCGTTCGCCTCGACGCACGCGG
GCGGCAGCGTCCGAAGGCCA

Product: putative Omp2b porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MRVIKRLALGTAAALLTAGVAQAADLPMKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGGYLRADATFGGSGAYDSPAWS
GTSGAKSRNANSYVFRSRQDINIDTRTATEYGVVRTYFDATFNWTTGSDSTAGGTLGVYFAFIQFAGFTFGKAVSQFDTP
WSGYPGNNTSFLIGGYDDVTGINQVAYTAEFGNGVSASISLEDASSYNQSALYNTSTMTAANFATGVYGTNSYAGSQIPD
IVGKIRVDQAWGLFQVSAAAHQVRASYYNTALETSGHPSDTWGYAVQGAISLKNLPTGPGDSINFTATYSNGATRYVIGG
SSPNSFAMYGSSSSAYQSLAIAGVADGVFSGTDVSNGSGISKTTAWGVRGAFNHNWNPYWSTSLFGSYTSIDYNGTATAQ
ICATAVGFTCNPDFKIAQIGTVTRWTPVKNLTFSGEVMYTYLDQSYSGNVALPAVSSVSKPAATYELKDQGAWSGNLRVQ
RTF

Sequences:

>Translated_483_residues
MRVIKRLALGTAAALLTAGVAQAADLPMKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGGYLRADATFGGSGAYDSPAWS
GTSGAKSRNANSYVFRSRQDINIDTRTATEYGVVRTYFDATFNWTTGSDSTAGGTLGVYFAFIQFAGFTFGKAVSQFDTP
WSGYPGNNTSFLIGGYDDVTGINQVAYTAEFGNGVSASISLEDASSYNQSALYNTSTMTAANFATGVYGTNSYAGSQIPD
IVGKIRVDQAWGLFQVSAAAHQVRASYYNTALETSGHPSDTWGYAVQGAISLKNLPTGPGDSINFTATYSNGATRYVIGG
SSPNSFAMYGSSSSAYQSLAIAGVADGVFSGTDVSNGSGISKTTAWGVRGAFNHNWNPYWSTSLFGSYTSIDYNGTATAQ
ICATAVGFTCNPDFKIAQIGTVTRWTPVKNLTFSGEVMYTYLDQSYSGNVALPAVSSVSKPAATYELKDQGAWSGNLRVQ
RTF
>Mature_483_residues
MRVIKRLALGTAAALLTAGVAQAADLPMKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGGYLRADATFGGSGAYDSPAWS
GTSGAKSRNANSYVFRSRQDINIDTRTATEYGVVRTYFDATFNWTTGSDSTAGGTLGVYFAFIQFAGFTFGKAVSQFDTP
WSGYPGNNTSFLIGGYDDVTGINQVAYTAEFGNGVSASISLEDASSYNQSALYNTSTMTAANFATGVYGTNSYAGSQIPD
IVGKIRVDQAWGLFQVSAAAHQVRASYYNTALETSGHPSDTWGYAVQGAISLKNLPTGPGDSINFTATYSNGATRYVIGG
SSPNSFAMYGSSSSAYQSLAIAGVADGVFSGTDVSNGSGISKTTAWGVRGAFNHNWNPYWSTSLFGSYTSIDYNGTATAQ
ICATAVGFTCNPDFKIAQIGTVTRWTPVKNLTFSGEVMYTYLDQSYSGNVALPAVSSVSKPAATYELKDQGAWSGNLRVQ
RTF

Specific function: Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 50989; Mature: 50989

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVIKRLALGTAAALLTAGVAQAADLPMKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCEEEECCCCCEEEECC
YLRADATFGGSGAYDSPAWSGTSGAKSRNANSYVFRSRQDINIDTRTATEYGVVRTYFDA
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEE
TFNWTTGSDSTAGGTLGVYFAFIQFAGFTFGKAVSQFDTPWSGYPGNNTSFLIGGYDDVT
EEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCC
GINQVAYTAEFGNGVSASISLEDASSYNQSALYNTSTMTAANFATGVYGTNSYAGSQIPD
CCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCEEHHHHCCCCCCCCCCCCCCCHH
IVGKIRVDQAWGLFQVSAAAHQVRASYYNTALETSGHPSDTWGYAVQGAISLKNLPTGPG
HHHEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCC
DSINFTATYSNGATRYVIGGSSPNSFAMYGSSSSAYQSLAIAGVADGVFSGTDVSNGSGI
CCEEEEEEECCCCEEEEEECCCCCCEEEECCCCHHHHHEEEEEHHCCCCCCCCCCCCCCC
SKTTAWGVRGAFNHNWNPYWSTSLFGSYTSIDYNGTATAQICATAVGFTCNPDFKIAQIG
CCCEECCCCCCCCCCCCCEECHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEEC
TVTRWTPVKNLTFSGEVMYTYLDQSYSGNVALPAVSSVSKPAATYELKDQGAWSGNLRVQ
CEEEECCCCCCEECCCEEEEEECCCCCCCEEECCHHCCCCCCEEEEECCCCCCCCCEEEE
RTF
EEC
>Mature Secondary Structure
MRVIKRLALGTAAALLTAGVAQAADLPMKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCEEEECCCCCEEEECC
YLRADATFGGSGAYDSPAWSGTSGAKSRNANSYVFRSRQDINIDTRTATEYGVVRTYFDA
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEE
TFNWTTGSDSTAGGTLGVYFAFIQFAGFTFGKAVSQFDTPWSGYPGNNTSFLIGGYDDVT
EEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCC
GINQVAYTAEFGNGVSASISLEDASSYNQSALYNTSTMTAANFATGVYGTNSYAGSQIPD
CCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCEEHHHHCCCCCCCCCCCCCCCHH
IVGKIRVDQAWGLFQVSAAAHQVRASYYNTALETSGHPSDTWGYAVQGAISLKNLPTGPG
HHHEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCC
DSINFTATYSNGATRYVIGGSSPNSFAMYGSSSSAYQSLAIAGVADGVFSGTDVSNGSGI
CCEEEEEEECCCCEEEEEECCCCCCEEEECCCCHHHHHEEEEEHHCCCCCCCCCCCCCCC
SKTTAWGVRGAFNHNWNPYWSTSLFGSYTSIDYNGTATAQICATAVGFTCNPDFKIAQIG
CCCEECCCCCCCCCCCCCEECHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEEC
TVTRWTPVKNLTFSGEVMYTYLDQSYSGNVALPAVSSVSKPAATYELKDQGAWSGNLRVQ
CEEEECCCCCCEECCCEEEEEECCCCCCCEEECCHHCCCCCCEEEEECCCCCCCCCEEEE
RTF
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2509359 [H]