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The map label for this gene is 86747223

Identifier: 86747223

GI number: 86747223

Start: 103097

End: 105265

Strand: Reverse

Name: 86747223

Synonym: RPB_0096

Alternate gene names: NA

Gene position: 105265-103097 (Counterclockwise)

Preceding gene: 86747225

Following gene: 86747221

Centisome position: 1.97

GC content: 68.42

Gene sequence:

>2169_bases
ATGAAGACCTTCCTGACCGTGAAACTGGTGCTGGTGCCGTTCGCGCTGTTCTGGGCGCTGCTGGCGATGGGCCACGTCGA
CTGGGCAATCGGCGCGGGGCTCGTGCTGGCTCTGATCGGCAATGCTTGGCGTGCGTGGCGGCGCGAATTGTTCGTGCTTG
AAGTCGGCGGGCTGGTGCTGTTTCTCGGCCTCGGCGGGTTGCTGCTCGTGGTGCCCGATCTCGCGGCGCCGACCGCGCTG
TGGCTCTCGTTCGCGGGGCTGTCCGCGATCAGCATCGCGAGCCTGGTTGTGCGCCGGCCGTGGACCTCGGACTACGCCCG
CGCCGCCTATCCGGACAATGCCGCCACGCCGCAGTTCTTCGTCATCAACGCCGCGATCACCGCGCTGTGGGCGGTGCTGT
TCGCCGCGATCGCCGCCTGCCGCTATGCCGGCGCGCCGGGCGGTGTGATTGCCGCCCTCGTCATCGGCGGCGCGCTGATC
TCGATCTTCGGGCCGAGGCTGGCGATCCGCTTTGTTCTGCAGCGGCTGGCCGCTTCGGGCGAAACCTATCGTTGGCCGGC
GCCGTCCTTCGCGCGCGACAATGCGGCGGATTGCGACGTTGCGGTGATCGGCGCCGGCATCGGCGGGCTGACCGCCGCGG
CGCTGCTCGCCGATGCGGGGCTGAAGGTGAAGGTGTTCGATCAGCACGTCGTCGCCGGCGGCTATTGCCATACCTATCTG
CGCAAGGCGCATCACCTCAACAAGCCGGTGCTGTATCGCTTCGACGCCGGGCCGCACGATTTCTCCGGCGTGCAGCCGGG
CGGGCCGTTCGCCACGTTGCTGCTACGACTCGGCGTCGCCGACCGCATCACGTGGGAGCGGGTGACGCAGAGCTTCCACA
CCGCGCGCGGCGCAATCGACGTGCCGCCGGACTGGCGCGACTACGTCCGCGTGCTCGGCGAGCGGTTTCCGGACAGCGCC
GCCGGGATCAAGTCGCTGTTCGAGGAGATCAAGGCGATCTTCGACGACATGTTCTCGACCGCCGCGAGCCGCGGCGGCGT
TCCCGGGCCGCCGTCGACGATCGACGAATTGCTGGCGTTTCCGCGCGCGCATCCGCATGCCTACAAATGGATGAACAGGC
CGTTCGCCGAGCTGGTCGCGGCGCATGTCCGCGATCCCGCTGTGGTCGCAGTGATCGACGGGCTGGCGGGCTATATCGGC
GACGGCAGCGAGCCGCCGAGCTGCGCCCGGATGGTGCCGATCTTCGGCTACTACTTCCACGGCGGCTATTATCCGCGCGG
CGGCTCGGGCGTGGTCGCCGATGCGCTGGTCGAGGCGATCGAAGCGCGCGATGGTGAGGTGCGGCTGAAGACCGCCGTGA
AACAGATCATCGTCGAGAACGGAAGCGCCGCCGGCGTGGTGCTCGCCGATGGCGAGAGGGTGCGCGCCCGTGCGGTGGTG
TCGAATGCCGACTTCAAGCGCACGCTGCTCGAACTGGTGCCCGCGGCGGCGCTGCCGCGCGGCGTTCGCGACGATCTCGC
CGCGGCGGCGCCGGCGAATTCTTGCTTCAGCGTGCATCTCGGCGTCGATTTCGTCCCGGACCTCGGTCCCTCGACGCATC
TGCACGCGCCAATGCCGCTCGGCATCGCGATGATGTCGAAATGCGACCCCACCGCCGCGCCGCCGGGACATGCGATCCTC
TCCCTGATCGCGCTGGTGCCGCATGACGAGGCGAAGAGCTGGTTTCCGCAGGAGAGTGGCGGCAACGACTGGAAGGAGTG
GCGGCGCTCCGAAGATTACTTGCGGCGCAAGGAGGAATTCGGCGACCGCATGATCGCCGCCGCAGAGACGGCGATCCCCG
GGCTGTCGCAGCACATCGTGTATCGCACCGACGCCAGCCCGGTGACCTATGCGCGCTACGACTGGGCGAGCTTCGGCGCG
ATCTACGGGATGTCGACCGCGGGACAGCTCAAAGGCTCGAAAACCGCGCTGCGCCATCTGGTGATCGCCGGCGGCGGCAA
TATCGGCGCCGGGGTCGAAGCGGTGGTGATCTCCGGCGCCAATGCCGCCGAAGCGCTGGTGCCGGGATTGCTGGCGCGGG
CTGGAAGCGAGGCGACAGCGTCGATCAGTTTACTTACGCCAAAGTCCCATGCCCCGGACAAAGCGGACCGCGAAGCGGTG
CGCTGCTGA

Upstream 100 bases:

>100_bases
TTGGTACCCGATGGTACCGGAAGCGCCGGCGGCGTCAATGTTGCGGCCGCTCAATGGCTCCGGCGCAGCCACCGGCGATG
ATTCGACCCCGGAGGCCGCG

Downstream 100 bases:

>100_bases
TCCGGGCCCCGGTTATTTCGGTGGCAGATCGGGGTCCCGGATCTGCGCCGCAGCGCTGACGCGCTGCCGCTTGTCCGGGA
CACAGTCTCTCATTCTCAGG

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: Carotenoid Isomerase; Amine Oxidase; Carotene Isomerase; Phytoene Dehydrogenase; Phytoene Desaturase; All-Trans-Retinol; Phytoene Dehydrogenase-Related Protein; Phytoene Dehydrogenase And Related Proteins; Amine Oxydase Deshydrogenase; Oxidoreductase; Phytoene Dehydrogenase And Related Protein; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Carotenoid Cis-Trans Isomerase; Dehydrogenase-Related Protein; Diapophytoene Dehydrogenase Crtn; Amine Oxidase Flavin-Containing; Zeta-Phytoene Desaturase; Phytoene Dehydrogenase Or

Number of amino acids: Translated: 722; Mature: 722

Protein sequence:

>722_residues
MKTFLTVKLVLVPFALFWALLAMGHVDWAIGAGLVLALIGNAWRAWRRELFVLEVGGLVLFLGLGGLLLVVPDLAAPTAL
WLSFAGLSAISIASLVVRRPWTSDYARAAYPDNAATPQFFVINAAITALWAVLFAAIAACRYAGAPGGVIAALVIGGALI
SIFGPRLAIRFVLQRLAASGETYRWPAPSFARDNAADCDVAVIGAGIGGLTAAALLADAGLKVKVFDQHVVAGGYCHTYL
RKAHHLNKPVLYRFDAGPHDFSGVQPGGPFATLLLRLGVADRITWERVTQSFHTARGAIDVPPDWRDYVRVLGERFPDSA
AGIKSLFEEIKAIFDDMFSTAASRGGVPGPPSTIDELLAFPRAHPHAYKWMNRPFAELVAAHVRDPAVVAVIDGLAGYIG
DGSEPPSCARMVPIFGYYFHGGYYPRGGSGVVADALVEAIEARDGEVRLKTAVKQIIVENGSAAGVVLADGERVRARAVV
SNADFKRTLLELVPAAALPRGVRDDLAAAAPANSCFSVHLGVDFVPDLGPSTHLHAPMPLGIAMMSKCDPTAAPPGHAIL
SLIALVPHDEAKSWFPQESGGNDWKEWRRSEDYLRRKEEFGDRMIAAAETAIPGLSQHIVYRTDASPVTYARYDWASFGA
IYGMSTAGQLKGSKTALRHLVIAGGGNIGAGVEAVVISGANAAEALVPGLLARAGSEATASISLLTPKSHAPDKADREAV
RC

Sequences:

>Translated_722_residues
MKTFLTVKLVLVPFALFWALLAMGHVDWAIGAGLVLALIGNAWRAWRRELFVLEVGGLVLFLGLGGLLLVVPDLAAPTAL
WLSFAGLSAISIASLVVRRPWTSDYARAAYPDNAATPQFFVINAAITALWAVLFAAIAACRYAGAPGGVIAALVIGGALI
SIFGPRLAIRFVLQRLAASGETYRWPAPSFARDNAADCDVAVIGAGIGGLTAAALLADAGLKVKVFDQHVVAGGYCHTYL
RKAHHLNKPVLYRFDAGPHDFSGVQPGGPFATLLLRLGVADRITWERVTQSFHTARGAIDVPPDWRDYVRVLGERFPDSA
AGIKSLFEEIKAIFDDMFSTAASRGGVPGPPSTIDELLAFPRAHPHAYKWMNRPFAELVAAHVRDPAVVAVIDGLAGYIG
DGSEPPSCARMVPIFGYYFHGGYYPRGGSGVVADALVEAIEARDGEVRLKTAVKQIIVENGSAAGVVLADGERVRARAVV
SNADFKRTLLELVPAAALPRGVRDDLAAAAPANSCFSVHLGVDFVPDLGPSTHLHAPMPLGIAMMSKCDPTAAPPGHAIL
SLIALVPHDEAKSWFPQESGGNDWKEWRRSEDYLRRKEEFGDRMIAAAETAIPGLSQHIVYRTDASPVTYARYDWASFGA
IYGMSTAGQLKGSKTALRHLVIAGGGNIGAGVEAVVISGANAAEALVPGLLARAGSEATASISLLTPKSHAPDKADREAV
RC
>Mature_722_residues
MKTFLTVKLVLVPFALFWALLAMGHVDWAIGAGLVLALIGNAWRAWRRELFVLEVGGLVLFLGLGGLLLVVPDLAAPTAL
WLSFAGLSAISIASLVVRRPWTSDYARAAYPDNAATPQFFVINAAITALWAVLFAAIAACRYAGAPGGVIAALVIGGALI
SIFGPRLAIRFVLQRLAASGETYRWPAPSFARDNAADCDVAVIGAGIGGLTAAALLADAGLKVKVFDQHVVAGGYCHTYL
RKAHHLNKPVLYRFDAGPHDFSGVQPGGPFATLLLRLGVADRITWERVTQSFHTARGAIDVPPDWRDYVRVLGERFPDSA
AGIKSLFEEIKAIFDDMFSTAASRGGVPGPPSTIDELLAFPRAHPHAYKWMNRPFAELVAAHVRDPAVVAVIDGLAGYIG
DGSEPPSCARMVPIFGYYFHGGYYPRGGSGVVADALVEAIEARDGEVRLKTAVKQIIVENGSAAGVVLADGERVRARAVV
SNADFKRTLLELVPAAALPRGVRDDLAAAAPANSCFSVHLGVDFVPDLGPSTHLHAPMPLGIAMMSKCDPTAAPPGHAIL
SLIALVPHDEAKSWFPQESGGNDWKEWRRSEDYLRRKEEFGDRMIAAAETAIPGLSQHIVYRTDASPVTYARYDWASFGA
IYGMSTAGQLKGSKTALRHLVIAGGGNIGAGVEAVVISGANAAEALVPGLLARAGSEATASISLLTPKSHAPDKADREAV
RC

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI203098013, Length=494, Percent_Identity=26.3157894736842, Blast_Score=88, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 76529; Mature: 76529

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTFLTVKLVLVPFALFWALLAMGHVDWAIGAGLVLALIGNAWRAWRRELFVLEVGGLVL
CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHH
FLGLGGLLLVVPDLAAPTALWLSFAGLSAISIASLVVRRPWTSDYARAAYPDNAATPQFF
HHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEE
VINAAITALWAVLFAAIAACRYAGAPGGVIAALVIGGALISIFGPRLAIRFVLQRLAASG
EHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ETYRWPAPSFARDNAADCDVAVIGAGIGGLTAAALLADAGLKVKVFDQHVVAGGYCHTYL
CCEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCHHHCCHHHHHHH
RKAHHLNKPVLYRFDAGPHDFSGVQPGGPFATLLLRLGVADRITWERVTQSFHTARGAID
HHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
VPPDWRDYVRVLGERFPDSAAGIKSLFEEIKAIFDDMFSTAASRGGVPGPPSTIDELLAF
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
PRAHPHAYKWMNRPFAELVAAHVRDPAVVAVIDGLAGYIGDGSEPPSCARMVPIFGYYFH
CCCCCHHHHHHCCCHHHHHHHHCCCCHHEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
GGYYPRGGSGVVADALVEAIEARDGEVRLKTAVKQIIVENGSAAGVVLADGERVRARAVV
CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH
SNADFKRTLLELVPAAALPRGVRDDLAAAAPANSCFSVHLGVDFVPDLGPSTHLHAPMPL
CCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEECCEECCCCCCCCCCCCCCCH
GIAMMSKCDPTAAPPGHAILSLIALVPHDEAKSWFPQESGGNDWKEWRRSEDYLRRKEEF
HHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
GDRMIAAAETAIPGLSQHIVYRTDASPVTYARYDWASFGAIYGMSTAGQLKGSKTALRHL
HHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCHHHHHHHHCCCCCCCCCCHHHHHHEE
VIAGGGNIGAGVEAVVISGANAAEALVPGLLARAGSEATASISLLTPKSHAPDKADREAV
EEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHC
RC
CC
>Mature Secondary Structure
MKTFLTVKLVLVPFALFWALLAMGHVDWAIGAGLVLALIGNAWRAWRRELFVLEVGGLVL
CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHH
FLGLGGLLLVVPDLAAPTALWLSFAGLSAISIASLVVRRPWTSDYARAAYPDNAATPQFF
HHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEE
VINAAITALWAVLFAAIAACRYAGAPGGVIAALVIGGALISIFGPRLAIRFVLQRLAASG
EHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ETYRWPAPSFARDNAADCDVAVIGAGIGGLTAAALLADAGLKVKVFDQHVVAGGYCHTYL
CCEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCHHHCCHHHHHHH
RKAHHLNKPVLYRFDAGPHDFSGVQPGGPFATLLLRLGVADRITWERVTQSFHTARGAID
HHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
VPPDWRDYVRVLGERFPDSAAGIKSLFEEIKAIFDDMFSTAASRGGVPGPPSTIDELLAF
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
PRAHPHAYKWMNRPFAELVAAHVRDPAVVAVIDGLAGYIGDGSEPPSCARMVPIFGYYFH
CCCCCHHHHHHCCCHHHHHHHHCCCCHHEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
GGYYPRGGSGVVADALVEAIEARDGEVRLKTAVKQIIVENGSAAGVVLADGERVRARAVV
CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH
SNADFKRTLLELVPAAALPRGVRDDLAAAAPANSCFSVHLGVDFVPDLGPSTHLHAPMPL
CCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEECCEECCCCCCCCCCCCCCCH
GIAMMSKCDPTAAPPGHAILSLIALVPHDEAKSWFPQESGGNDWKEWRRSEDYLRRKEEF
HHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
GDRMIAAAETAIPGLSQHIVYRTDASPVTYARYDWASFGAIYGMSTAGQLKGSKTALRHL
HHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCHHHHHHHHCCCCCCCCCCHHHHHHEE
VIAGGGNIGAGVEAVVISGANAAEALVPGLLARAGSEATASISLLTPKSHAPDKADREAV
EEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHC
RC
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA