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The map label for this gene is 86609165

Identifier: 86609165

GI number: 86609165

Start: 1789719

End: 1790279

Strand: Reverse

Name: 86609165

Synonym: CYB_1705

Alternate gene names: NA

Gene position: 1790279-1789719 (Counterclockwise)

Preceding gene: 86609167

Following gene: 86609161

Centisome position: 58.76

GC content: 59.36

Gene sequence:

>561_bases
ATGCTGGTGGATAACCCCAAGCAGCGACTGTTTCTTGCTCTGCTCCCCCCTCCAGCACTGCAAGAGCAGGTGACAGCCAT
CAAACAGCAGTTTGCCGAGCAATTTGCCAGCCAAGCGGCCCTGCGCTCGCCTCCCCACATCACTCTGGTGCCGCCGTTCG
AGTGGCCCAGTTCCGATCTGCCGGCCTTGACGGGATCCCTAGAGGCCTTTGCCAGGCGTCAGACCCCCGTCTCCATCCAG
CTATCCGGCTTTGGGGCCTTCGCACCGCGCGTCATTTTTATCCATGTCGTGCCCTCCCCAGAACTGCAGCGGCTACAAGC
TCAAGCCCATCACCACATGGGGATCCTTCTCAACCAGAAAGAGACAACCGCTCAAGCCCGTCCGTTTGTGCCCCACATGA
CCGTTGCCTTTCGAGATCTAACCCCCGCCCACTTTCGCGCCGCTTGGCCGCAGTTCAAGACCCGTTTTTTTCAAAGTTCC
TTCACGGCGTCGGCTTTGACGCTTCTCCTCCACGACGGCAAGCGCTGGCAGGTTTTTGCCCAGTTCTCGATGGGGGAATA
A

Upstream 100 bases:

>100_bases
GAGGGATCCAGGATAGGGGAAGAAGCGACAGGACGCGACATAACAAGATGTTTGGGCTTGGCTACAGTTGCATTATCCCC
TGTTCTCTAGGTTCTTACCG

Downstream 100 bases:

>100_bases
TGGGGAACAGAAGAGGGTTGCCAACCGAAGCAGCCTACTCCACCCAGTGAGCGGCCATGTATTCCGCCAAGTCCAACACC
CGCTGGGAGTAGCCCCACTC

Product: 2',5' RNA ligase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MLVDNPKQRLFLALLPPPALQEQVTAIKQQFAEQFASQAALRSPPHITLVPPFEWPSSDLPALTGSLEAFARRQTPVSIQ
LSGFGAFAPRVIFIHVVPSPELQRLQAQAHHHMGILLNQKETTAQARPFVPHMTVAFRDLTPAHFRAAWPQFKTRFFQSS
FTASALTLLLHDGKRWQVFAQFSMGE

Sequences:

>Translated_186_residues
MLVDNPKQRLFLALLPPPALQEQVTAIKQQFAEQFASQAALRSPPHITLVPPFEWPSSDLPALTGSLEAFARRQTPVSIQ
LSGFGAFAPRVIFIHVVPSPELQRLQAQAHHHMGILLNQKETTAQARPFVPHMTVAFRDLTPAHFRAAWPQFKTRFFQSS
FTASALTLLLHDGKRWQVFAQFSMGE
>Mature_186_residues
MLVDNPKQRLFLALLPPPALQEQVTAIKQQFAEQFASQAALRSPPHITLVPPFEWPSSDLPALTGSLEAFARRQTPVSIQ
LSGFGAFAPRVIFIHVVPSPELQRLQAQAHHHMGILLNQKETTAQARPFVPHMTVAFRDLTPAHFRAAWPQFKTRFFQSS
FTASALTLLLHDGKRWQVFAQFSMGE

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 20887; Mature: 20887

Theoretical pI: Translated: 11.17; Mature: 11.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVDNPKQRLFLALLPPPALQEQVTAIKQQFAEQFASQAALRSPPHITLVPPFEWPSSDL
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
PALTGSLEAFARRQTPVSIQLSGFGAFAPRVIFIHVVPSPELQRLQAQAHHHMGILLNQK
CHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHCCEEEEEECC
ETTAQARPFVPHMTVAFRDLTPAHFRAAWPQFKTRFFQSSFTASALTLLLHDGKRWQVFA
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEE
QFSMGE
EECCCC
>Mature Secondary Structure
MLVDNPKQRLFLALLPPPALQEQVTAIKQQFAEQFASQAALRSPPHITLVPPFEWPSSDL
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
PALTGSLEAFARRQTPVSIQLSGFGAFAPRVIFIHVVPSPELQRLQAQAHHHMGILLNQK
CHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHCCEEEEEECC
ETTAQARPFVPHMTVAFRDLTPAHFRAAWPQFKTRFFQSSFTASALTLLLHDGKRWQVFA
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEE
QFSMGE
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA