| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is petC [H]
Identifier: 86609084
GI number: 86609084
Start: 1694794
End: 1695312
Strand: Reverse
Name: petC [H]
Synonym: CYB_1622
Alternate gene names: 86609084
Gene position: 1695312-1694794 (Counterclockwise)
Preceding gene: 86609086
Following gene: 86609083
Centisome position: 55.64
GC content: 62.43
Gene sequence:
>519_bases ATGACGGAAGCGGTTAGCAACTTTGAAGCGCCCCCCATGAGCCGGCGGGTTCTTCTCAATGCCCTGCTCAGCGGCTCTGT GGGAGTCGTGGTGGTGGGCGCCCTCTACCCGGTGGTGAAGTACTTTATTCCGCCCTCTGCCGGTGGAGGGGGGGAAGGCC TCATCGCTCAGGACGCCCTCGGCAAGCCCATCAGCGTCAGTGAACTGTTGGCCACCCATGCCGCTACGGATCGGGTGCTG GCCCAAGGTTTGAAGGGGGATCCCACCTACATCGTGATCGACAACGGGGCGGTGGCCAACTATGGCCTCAACGCGGTTTG TACCCACCTCGGTTGCGTGGTGCCCTGGAATGTGGGGGAAAACTTGTTTAAGTGCCCTTGCCACGGATCCCAGTATGCGG CCAATGGCAAGGTGATCCGGGGACCGGCTCCCCGCTCGCTGGAGCTGGTGAGCGCCACTGTGGATGGCGACAACGTCCGC TTCAGCCCTTGGCAAGGCCCCGATTTCCGGGAAACCTAA
Upstream 100 bases:
>100_bases TACAGCGTTGCATTTCTTAACGATATTGGCCAGAGGGGTCGGTTAGGATGATGTCGCTTGTCAACGAACGTTAAAACTTC TCAGGTCTGCATTTGCCATT
Downstream 100 bases:
>100_bases AGGGCAAGGGATCCCGCTGGCTGTGCCGGCTTTTGCCGAACGATTTGGGGCAAATTGTCGAGATGGCTGTTCCAAGACTG TGTCCTAAACCTGTGATGGA
Product: cytochrome b6-f complex iron-sulfur subunit
Products: NA
Alternate protein names: Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein; ISP; RISP; Rieske iron-sulfur protein [H]
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MTEAVSNFEAPPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDALGKPISVSELLATHAATDRVL AQGLKGDPTYIVIDNGAVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVR FSPWQGPDFRET
Sequences:
>Translated_172_residues MTEAVSNFEAPPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDALGKPISVSELLATHAATDRVL AQGLKGDPTYIVIDNGAVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVR FSPWQGPDFRET >Mature_171_residues TEAVSNFEAPPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDALGKPISVSELLATHAATDRVLA QGLKGDPTYIVIDNGAVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRF SPWQGPDFRET
Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions [H]
COG id: COG0723
COG function: function code C; Rieske Fe-S protein
Gene ontology:
Cell location: Cellular thylakoid membrane; Single-pass membrane protein. Note=The transmembrane helix obliquely spans the membrane in one monomer, and its extrinsic C- terminal domain is part of the other monomer (By similarity) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Rieske domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014909 - InterPro: IPR017941 - InterPro: IPR014349 - InterPro: IPR005805 [H]
Pfam domain/function: PF08802 CytB6-F_Fe-S; PF00355 Rieske [H]
EC number: =1.10.99.1 [H]
Molecular weight: Translated: 17932; Mature: 17800
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: PS00199 RIESKE_1 ; PS00200 RIESKE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEAVSNFEAPPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDAL CCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCEEEHHHC GKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNGAVANYGLNAVCTHLGCVVPWNVGE CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEECCCHHHHHHHHCEEEECCCCC NLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFRET CEEECCCCCCEECCCCEEEECCCCCCEEEEEEEECCCCEEECCCCCCCCCCC >Mature Secondary Structure TEAVSNFEAPPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDAL CCCCCCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCEEEHHHC GKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNGAVANYGLNAVCTHLGCVVPWNVGE CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEECCCHHHHHHHHCEEEECCCCC NLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFRET CEEECCCCCCEECCCCEEEECCCCCCEEEEEEEECCCCEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA